Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e10
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   2.8  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   8.5  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 394 IAYNINKSNNLLQAVIGTTTFSGVRQLLSF*FQPTCLHFQGSLTFCEFCRRVVR 233
           + Y+ +KSN   ++ IG     G        F+  C+++       EF R V +
Sbjct: 438 LMYSADKSNQTAKSFIGVLDIYGFEHFKKNSFEQFCINYANEKLQQEFYRHVFK 491


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 22   DFIEKTEKVISNY*VFSIFSSF 87
            DF E+T +V+S   +F IFS F
Sbjct: 1439 DFTEETWEVVSRKFIFPIFSIF 1460


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 330 VVFGSFFPSDFSPLAYIFR 274
           + FGS FPS   PLA + R
Sbjct: 302 IKFGSHFPSKTVPLALVIR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,409
Number of Sequences: 5004
Number of extensions: 35851
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)