Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e08
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720     30   0.89 
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     28   3.6  
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906     28   4.7  
06_01_0031 - 305457-305663,306248-306523,306824-307609                 27   6.3  
01_01_0297 - 2437487-2437777,2438088-2438123                           27   6.3  

>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
          Length = 239

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 223 DVNIDSRSPKKTASA---TIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHEN 393
           DVN+D R    TA+    T    NP  P+    AG+ R FS       FY +  +  H+N
Sbjct: 22  DVNLDLRLVHSTAAGRQHTAATRNPAPPLA--AAGDDRAFSCTYCRRRFYSSQALGGHQN 79


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 76  EETQKSDR*YKLESETGIPSRCICL 2
           EE   SD  +KLE E+G PS C  L
Sbjct: 817 EEANTSDHDHKLEIESGAPSSCFDL 841


>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
          Length = 104

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 121 ENLIVYVPTDDDRLYI---DKKQFPKFNSVLVYRHEHDVNIDSRS 246
           +N ++YV TDD +L I      +FP+    LV+  E +++  S++
Sbjct: 39  DNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKT 83


>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +1

Query: 367 NTMIIQHENPKCP----IEFTYPETDMQSACSALLK 462
           NT+++  E  KCP    IE   PE D  + C A+ K
Sbjct: 227 NTVVVNKEQKKCPFSVKIEEIPPEEDNTAGCVAIRK 262


>01_01_0297 - 2437487-2437777,2438088-2438123
          Length = 108

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 289 LMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPE 426
           +M I        +V    L+ N  + N  + Q  NPKCP   +Y +
Sbjct: 24  IMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,254
Number of Sequences: 37544
Number of extensions: 290291
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)