Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e06
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   118   7e-28
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.2  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   5.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  118 bits (283), Expect = 7e-28
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 369 KTTAKGLFKILEKYRPET 422
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 404
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 531  LCLCRIGWC 505
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 287 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 376
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 485 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 315
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 375 TAKGLFKILEKYR 413
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 339  EGALSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQWQSSLASSRREDSR 184
            +GAL   A V   G   G+ +++    T H L +     Q +L+SS+R  +R
Sbjct: 1538 KGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRAR 1589


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 404  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 303
            L+N ++ L  +L + L  +V++  H  TTL Y+L
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,444
Number of Sequences: 5004
Number of extensions: 35278
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)