Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e06
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 137 6e-33
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 125 2e-29
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 5e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 8e-22
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.019
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 28 3.8
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.0
U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 6.7
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 6.7
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 6.7
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 27 6.7
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 8.8
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 27 8.8
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 137 bits (331), Expect = 6e-33
Identities = 63/119 (52%), Positives = 79/119 (66%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 545
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LV
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLV 148
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 125 bits (302), Expect = 2e-29
Identities = 63/119 (52%), Positives = 79/119 (66%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 545
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LV
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLV 128
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 5e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 369 KTTAKGLFKILEKYRPET 422
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 8e-22
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 464 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 345
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 2 LFVSAIFAESLVYDLGHVSFRGL 70
LF+ ++++ +VYD+ HV F GL
Sbjct: 719 LFIWSVYSPKVVYDMAHVIFFGL 741
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 337 LRSTNLPRHWTRLQLRA 387
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical
protein T01B6.4 protein.
Length = 138
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 276 AILQIWTSHELAECPDQWQSSLASSRREDSRSSWAQPF*PP 154
AI+ + S+ E P+QW+ S+ ED SW + PP
Sbjct: 12 AIIVVNASYRATESPEQWRQRFLKSQSED--PSWLRFPTPP 50
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 533 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 402
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 533 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 402
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 533 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 402
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 3 FLFRPFSPKVWYTI*VTYLFVA 68
FLF PFS VW + +T L VA
Sbjct: 54 FLFHPFSTTVWLLLSLTVLVVA 75
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 278 QVYPHPAPE--GCTSASSESAPSDQPIYP 358
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 278 QVYPHPAPE--GCTSASSESAPSDQPIYP 358
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 278 QVYPHPAPE--GCTSASSESAPSDQPIYP 358
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +2
Query: 266 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 388
C P P P GC+ + +++ DQPIY T Q Y+ P
Sbjct: 35 CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,747
Number of Sequences: 27780
Number of extensions: 204975
Number of successful extensions: 605
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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