Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e04
         (529 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   2.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.7  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    21   6.7  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    21   6.7  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   8.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.9  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 253 VRCIYVLRIMSIGGRYNI--SCQHGTLT 176
           VRC+  L   ++GG  NI   C   T T
Sbjct: 327 VRCVLSLHCAAVGGSANIMSGCSTSTST 354


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 420 VGVSGSVCFIKVHADKSTSLSNCV*YLPSVQTRACDDV 307
           VG +G VC +++ + K  +L   V          C+D+
Sbjct: 127 VGWTGKVCDVEMVSCKDAALRKVVPLKKLCNNGTCEDI 164


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 510 IGVHSSLVIVWGSTPTTSPSLRFEASH 430
           +G H SL+   G+TP  S +  +  +H
Sbjct: 51  MGGHGSLLSPSGNTPNKSSTSPYPPNH 77


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 416 PTLEKWLASNLKDGDVVGVDPQTMTRD 496
           PT E+W   +  D D +  DP+  TR+
Sbjct: 17  PT-ERWQRLSFDDEDNLPKDPRQWTRE 42


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 416 PTLEKWLASNLKDGDVVGVDPQTMTRD 496
           PT E+W   +  D D +  DP+  TR+
Sbjct: 17  PT-ERWQRLSFDDEDNLPKDPRQWTRE 42


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 86  RLLSGYFNAILLLFTMIIHGRTERQELP 3
           RLL  YFN ++   T    G   ++ LP
Sbjct: 41  RLLKNYFNCLMERGTCSPDGEELKKALP 68


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 269 ISAFTGSAGTAVVTSSQAL 325
           +   TG+ GTA+V+ S ++
Sbjct: 287 VGTMTGAGGTAIVSISTSV 305


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 456 PSLRFEASHFSKVGVSGSVCFI 391
           P+  +EA    ++G +G  C+I
Sbjct: 775 PNKYYEAKQVYRIGSNGLQCYI 796


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,573
Number of Sequences: 336
Number of extensions: 2263
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)