Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e04
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    96   3e-21
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   2.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   5.3  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.2  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 50/115 (43%), Positives = 69/115 (60%)
 Frame = +2

Query: 146 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVVTSSQAL 325
           RL  LR LM  +   L  Y++P+ DAH+SEY   ADA R +IS F GSAG AV+  + A 
Sbjct: 8   RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65

Query: 326 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMT 490
           ++TDGRY+ Q  +++D   WTLMKQ     PT E++     K  + VG+D   +T
Sbjct: 66  LFTDGRYFNQASQQLD-ENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLIT 119


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 299 AVVTSSQALVWTDGRYYTQFEREVDL 376
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 260 REWISAFTGSAGTAVVTSSQALVWTD 337
           R W++++ G  G     S + L+W +
Sbjct: 43  RSWMTSYVGFNGETAAISEEQLIWAE 68


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 435 SHFSKVGVSGSVCFIKVHADKSTSLSNCV*YLPSVQTRACDDVTTAVPAD 286
           S FSK+ V     FI V A   T L   V  + ++ +  C++  T  P +
Sbjct: 226 SEFSKISVDTRDIFIDVTATDKTKLEIVVNMMTTMFSCYCEEPFTIEPVN 275


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 347  YTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 475
            Y +F+ +        MK    D  TLE WL +  KD D  G D
Sbjct: 889  YDKFDGDEFACICESMKNVKLDFVTLEDWLKALEKDVDEKGED 931


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +2

Query: 191  LAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVVTSS 316
            +AA + PT+ +  S +  +++      ++ TGS+ +++ T+S
Sbjct: 941  VAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATAS 982


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,540
Number of Sequences: 5004
Number of extensions: 37952
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)