Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14e04
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 114 5e-26
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 106 1e-23
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 64 9e-11
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 63 1e-10
01_06_0546 + 30124693-30124970,30125711-30125861,30125955-301261... 29 2.3
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 28 5.3
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175... 28 5.3
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 27 9.3
02_05_1109 + 34179578-34179636,34179644-34179989 27 9.3
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 114 bits (274), Expect = 5e-26
Identities = 53/127 (41%), Positives = 82/127 (64%)
Frame = +2
Query: 149 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVVTSSQALV 328
L LRALM++ P L A ++P+ DAH SEY+ D R+++S FTGSAG A++T +AL+
Sbjct: 14 LDELRALMAAHSPSLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSAGLALITMKEALL 73
Query: 329 WTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTP 508
WTDGRY+ Q E+++ + W LM+ + + P +E W+A NL D V+G++P ++ D
Sbjct: 74 WTDGRYFLQAEQQL-TNRWKLMR--MGEDPPVEVWIADNLSDEAVIGINPWCISVDTAQR 130
Query: 509 IQXALKK 529
+ A K
Sbjct: 131 YEHAFSK 137
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 106 bits (255), Expect = 1e-23
Identities = 52/129 (40%), Positives = 78/129 (60%)
Frame = +2
Query: 143 QRLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVVTSSQA 322
++L++LR L++ + AYI+P+ DAH SE+I R +++ FTGSAGTAVVT +A
Sbjct: 86 EKLRSLRRLLARPDVAIDAYIVPSQDAHQSEFIAECFMRRAYLTGFTGSAGTAVVTKDKA 145
Query: 323 LVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEW 502
+WTDGRY+ Q E+E+ WTLM+ PT +WL L G VG+DP + D
Sbjct: 146 ALWTDGRYFLQAEKELS-HDWTLMRSGNQGVPTTSEWLNEVLPSGCRVGIDPFLFSFDAA 204
Query: 503 TPIQXALKK 529
++ A+ +
Sbjct: 205 EELKDAISE 213
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 63.7 bits (148), Expect = 9e-11
Identities = 31/86 (36%), Positives = 50/86 (58%)
Frame = +2
Query: 272 SAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLK 451
+ FT G A++T +AL+WTDGRY+ Q E+++ W LM + + P +E W+A NL
Sbjct: 89 TTFTIWGGLALITMKEALLWTDGRYFLQAEKQLS-DHWELM--CMGEDPPVEVWIADNLS 145
Query: 452 DGDVVGVDPQTMTRDEWTPIQXALKK 529
D V+G++P ++ D + A K
Sbjct: 146 DEAVIGINPWCISVDTAQRYEHAFSK 171
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 149 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVV 307
L LRALM++ P L A ++P+ DAH SEY+ D ++IS FTG A +AV+
Sbjct: 11 LDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARSAVL 63
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +2
Query: 293 GTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGV 472
G A++T +AL+WTDGRY+ Q E+++ W LM+ + + P +E W+A NL D VVG+
Sbjct: 112 GLALITMKEALLWTDGRYFLQAEQQLS-DRWKLMR--MGEDPPVEVWIADNLSDEAVVGI 168
Query: 473 DPQTMTRDEWTPIQXALKK 529
+P ++ D + A K
Sbjct: 169 NPWCISVDTAQRYEHAFSK 187
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 149 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAV--VTSSQA 322
L LRALM++ P L A ++P+ DAH SEY+ D R+++S FTGSA + V ++
Sbjct: 10 LDELRALMAAHSPPLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSADGTIGWVRVAEV 69
Query: 323 LVWTDGRYYTQFEREV 370
W Y + V
Sbjct: 70 GRWNGRHVYAMLAKVV 85
>01_06_0546 +
30124693-30124970,30125711-30125861,30125955-30126137,
30126333-30126407,30126535-30126690,30126909-30127007,
30127075-30127205,30127690-30127771,30127846-30128199
Length = 502
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 191 LAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREV 370
+AA I+ T N+ YID ADA +W + S G V+ + T+F++E+
Sbjct: 248 IAAVILGTGS--NAAYIDHADAIPKWHGSLPKS-GNMVINMEWGNFKSSHLPLTEFDQEL 304
Query: 371 DLSAWTLMKQ 400
D + KQ
Sbjct: 305 DAESLNPGKQ 314
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 362 REVDLSAWTLMKQT-LPDTPTLEKWLASNLKDGDV 463
+ D +W T LPD ++WL+ NLKD V
Sbjct: 265 KTADAESWRKSGATVLPDLVAAQEWLSKNLKDEPV 299
>04_04_1310 -
32517074-32517193,32517295-32517360,32517468-32517558,
32517741-32517870,32517944-32518032,32518300-32518376,
32518539-32518607,32518800-32518874,32519040-32519135,
32519232-32519396
Length = 325
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 188 VLAAYIIPTADAHNSEYIDAADAXREWISAFTGSAGTA 301
++AA + PTA+ HN + AA R+W ++ +A
Sbjct: 3 IVAALVAPTANPHNPLRLIAAAPHRQWRRVAAAASSSA 40
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 112 PKRSQPRDVATALASAPSANVESASRVG 195
PK S P + TAL S+ S + A RVG
Sbjct: 52 PKPSPPPTLTTALRSSASPSASGAGRVG 79
>02_05_1109 + 34179578-34179636,34179644-34179989
Length = 134
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 413 TPTLEKWLASNLKDGDVVGVDPQTMTRDEW 502
TP +E WLA N + G G T T W
Sbjct: 64 TPAVEVWLAENGEGGGAAGDGANTPTVKAW 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,331
Number of Sequences: 37544
Number of extensions: 291346
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -