Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14e03
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.5  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    27   2.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   6.0  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.9  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 388 LITKSGVIQLIMKSKLPYAIELQEWLL 468
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 280 DGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 435
           D  YK   +H   I +     V K G P  L PH       G+I+ I   KL
Sbjct: 4   DSDYKRAEKHLSSIDNKWSSLVKKVG-PCTLTPHPEHAPYEGIIRAITSQKL 54


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 251 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 361
           I  G Y STS +ST+   + P+ SST    +  S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 193  DEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLY 369
            +EQ VRFV++ +   L Y++ +  I  H D K  +     D +   +   ++K  D +Y
Sbjct: 928  EEQLVRFVSRQVLYGLSYLHSKGII--HRDLKADNLLIDFDGVCKISDFGISKHSDNVY 984


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 190 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 315
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 271 HVLPVHNLHILNCW 230
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 313 RHAQTSICTCRRRGHVLPVHNLHILN 236
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,690
Number of Sequences: 5004
Number of extensions: 47865
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)