Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d22
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    26   2.6  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   7.8  

>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 306 HLFCPLLNGKTGTFHSLK 253
           H  CP++NG   TFH L+
Sbjct: 127 HASCPVINGLCDTFHPLQ 144


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 401 LSGFRSSFHYVNWFQVRTKLMEPI**TCVHLTTYFV 294
           L  F  +F+ V +FQ RT+L++P+     HL ++F+
Sbjct: 298 LDAFLPAFYDV-YFQCRTRLLKPV--LDYHLKSFFM 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,100
Number of Sequences: 5004
Number of extensions: 36967
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)