Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d22
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           32   0.28 
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    27   6.0  
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    27   7.9  

>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 441 CHVWITTTGM--AHRIIRFSVQFSLRELVSSQD*VDGANLMNL--RTLDH 304
           CH+WIT +    A  I+R  V+  L+    + D +DG +L+ +  RTL+H
Sbjct: 224 CHIWITVSQKFNASDIMRKMVRHMLQRCSPNIDSIDGRDLVEILKRTLEH 273


>03_02_0400 -
           8135283-8135490,8136047-8136213,8136289-8136477,
           8136560-8136655,8136746-8136874,8136947-8137123,
           8137256-8137366,8138592-8138792,8139022-8139186,
           8139293-8139527,8139618-8139745,8139833-8139928,
           8140017-8140112,8140252-8140325,8140393-8140462,
           8140556-8140665,8140753-8140906,8141040-8141155,
           8141259-8141379,8141464-8141641,8142331-8142489,
           8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 219 VQCNDLISQYPILKNETYQFYHLAVDKISGQVYAGSLNWLHQLSPDLKPIHVVKT 383
           V+   LI   P+ +++  QF +L   ++   +   SLNW HQL  + +P   +KT
Sbjct: 145 VELKKLIEANPLFRDKL-QFPNLKSSRLRTLINQ-SLNWQHQLCKNPRPNPDIKT 197


>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 13  VYRFRDSVSTASMDAFTSYIYFLIDKK 93
           +Y F  S +  S++    Y YFL++KK
Sbjct: 406 IYSFHQSSTLCSVEFALEYCYFLVEKK 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,682
Number of Sequences: 37544
Number of extensions: 209091
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)