Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d19
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.1  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 523  HSDFCILCLVSNVQSHM*QWQVKLLSYAFYV 431
            H  + ILC  ++V S +  W VK++  AF++
Sbjct: 1306 HPGYFILCFKASVNSPVTAWPVKVIPNAFFL 1336


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +1

Query: 385 CNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKY 564
           CN+    +L KL ++T    KR+  + + +  + H+   +  +N+ A  ++  L  MK  
Sbjct: 412 CNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENEIA-NLKNLLSKMKST 470

Query: 565 KL 570
           +L
Sbjct: 471 EL 472


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 496 QDTECKNQSAQKIQKFLEAMKKYKLT 573
           ++T+C ++  QK++++LE + +  LT
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLT 42


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 505 LCLVSNVQSHM*QWQVKLLSYAFYVCYLLTF 413
           LC ++ + SH+  WQ K+L    YV  L+ F
Sbjct: 693 LCNITFLGSHLCIWQPKILLGIMYVTDLVLF 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,181
Number of Sequences: 5004
Number of extensions: 44575
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)