Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d19
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533...    36   0.024
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    31   0.67 
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344...    28   4.7  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    28   6.2  

>12_02_0379 -
           18352103-18352246,18352994-18353146,18353258-18353375,
           18353785-18353792
          Length = 140

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 352 METIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQK 531
           M+  K N+ FL N+EV+  L+     T       A +A    +   YL  T   NQ+ + 
Sbjct: 1   MKIEKTNAGFLTNFEVLDFLRSRGAKTDPMGCLGA-VAASECKVYEYLLKTPACNQTRES 59

Query: 532 IQKFLEAMKKYKLTKVE 582
           I +F+   + +KLT  +
Sbjct: 60  INEFVTRCESFKLTNAD 76


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 537 LNFLGTLIFAFCVL*VMYSLICNSGK*SFSLMLFMCVIF*LLENLHNFI 391
           LN+ G L    CV+  +   +CN GK   +L L  CVI  +L++  + +
Sbjct: 691 LNYPGELSHRICVVTTILIFLCNDGKLHKNLSLGKCVIKGILQHTRHLM 739


>07_03_1489 +
           26933029-26933077,26933704-26933838,26934354-26934478,
           26934558-26934626,26934730-26934798,26935095-26935157,
           26935280-26936533
          Length = 587

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/76 (22%), Positives = 38/76 (50%)
 Frame = +1

Query: 349 NMETIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQ 528
           +++ +KA    +   + +++ + L D  H KHK   ++    YE +  ++ T  K Q A+
Sbjct: 71  SLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICK-KYE-LENIEITNAKKQKAE 128

Query: 529 KIQKFLEAMKKYKLTK 576
           K+ + ++     K+ K
Sbjct: 129 KLSREMKNKCNKKMPK 144


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 308 VSLAFGLFLKYIHEGPNIENIPHLTLLYTCFLWLDLYFLDIVYIAYLSLTPSI 150
           +S+  GLF   +   P  EN P+   L++  L+L    L IV I Y  L   I
Sbjct: 463 LSIIAGLFGINVDGIPGAENTPYAFALFSALLFLVGLLLIIVGIVYFGLQKPI 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,520
Number of Sequences: 37544
Number of extensions: 215012
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)