Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d13
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 124 3e-30
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 124 3e-30
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 124 3e-30
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 124 3e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 124 3e-30
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 83 2e-17
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 46 2e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 2e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.49
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 27 0.85
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 2.6
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 3.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 3.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 4.5
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 6.0
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 24 7.9
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 24 7.9
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 24 7.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 24 7.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 124 bits (300), Expect = 3e-30
Identities = 57/76 (75%), Positives = 67/76 (88%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
MQIF KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 198 IQKESTLHMVLRLRGG 245
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 82.6 bits (195), Expect = 2e-17
Identities = 37/76 (48%), Positives = 53/76 (69%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 197
M I KTLTGK I + +P + V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 198 IQKESTLHMVLRLRGG 245
++ S LH+VL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 46.0 bits (104), Expect = 2e-06
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +3
Query: 18 MQIFXKTLTGKTITAETEPAET-VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 194
M + K L + A+T +++LK+KI ++ V++Q+LI++G+ L D KT+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 195 NIQKE 209
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/61 (34%), Positives = 38/61 (62%)
Frame = +3
Query: 54 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 233
+T ++E +V LK+ IA + ++QRLI+AG+ L+D +++ Y IQ ++H+V
Sbjct: 18 VTVDSE--SSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKT 75
Query: 234 L 236
L
Sbjct: 76 L 76
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.9 bits (59), Expect = 0.49
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 78 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD--YNIQKESTLHMVL 230
+TV +LK+ IA P D+ +LI AG+ L + + + ++ T H+V+
Sbjct: 24 KTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTFHLVI 76
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.1 bits (57), Expect = 0.85
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 78 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLR 233
E ++D +IAD D++++I+A + + + +AD+N H +L+
Sbjct: 534 ELLSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFNQSLAKFPHKILK 585
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 2.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 45 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHM 224
G I +TV D K+K+ + V +L++ G L D + D ++ ES +
Sbjct: 9 GNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKG-NLSDDSHLQDV-VKNESKIMC 66
Query: 225 VLR 233
++R
Sbjct: 67 LIR 69
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 185 HSFGIFQLFARKDKSLLIYGH 123
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 14 KNANIXQNIDGQNHYRRNGTRRDGGRSQAKN 106
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 69 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS-KTMADYNIQKES 212
EPA + L ++ +D+E D++ F G L+ S KT+ D+ ++E+
Sbjct: 26 EPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDEQEA 74
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 188 GHSFGIFQLFARKDKSLLIYGHTFFIGNFLLE 93
G +FG+ ++F D + G +GN +LE
Sbjct: 79 GSAFGLDKIFQSSDSGNIAEGLELDLGNIMLE 110
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 57 TAETEPAETV---ADLKQKIADKEGVPVDQQRLIFAGKQLED 173
T E + E V A ++QK+A+KE +Q+ + A K ED
Sbjct: 297 TVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKARED 338
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 188 GHSFGIFQLFARKDKSLLIYGHTFFIG 108
GHS GIF + + D SL+ G IG
Sbjct: 305 GHSEGIFSIACQPDGSLVSSGGNDAIG 331
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 221 VKSRFLLNIVIGHSFGIFQLFARKDKSLLIYG 126
V SRF+L + GHS + L + ++LL+ G
Sbjct: 248 VNSRFILYKLYGHSGSVLCLDFCRRRNLLVSG 279
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 55 LPPKRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIFKRNLLF-TWC 228
LPP + +R S + +KK + L+LR ++ + LWPI + + ++F ++C
Sbjct: 1468 LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPLWPIVVSELLIIFKSYC 1526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,599
Number of Sequences: 5004
Number of extensions: 19988
Number of successful extensions: 73
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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