Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d12
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 30 0.24
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 1.7
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 26 3.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 3.0
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 4.0
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 26 4.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 4.0
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 25 5.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.1
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 29.9 bits (64), Expect = 0.24
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 518 RKMLLVPTLLEPSLTMSSLDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDST 339
R LL +L P T SL+ +A + N L C+ K ++L ++LF+ S
Sbjct: 740 RHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSKLFTLHSC 796
Query: 338 DSLLCPKLGDASVKE 294
SL +LG V +
Sbjct: 797 LSLALQRLGYGDVSK 811
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 29 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 65 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 503 VPTLLEPSLTMSSLDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 333
+P L P +S++ + +W+ +LS + R ++FT + + DS S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377
Query: 332 LLCPKLGDAS 303
LC +L + S
Sbjct: 378 SLCQRLDEIS 387
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 18 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 116
WSTS ++LL I + P SK L +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 379 NNARVANLRIAHGDNKLSQMYIAEKPLSRDDIVKEGS 489
N AR+ L D + ++ I EKP+ +D++ ++ S
Sbjct: 168 NGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKHS 204
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 521 PRKMLLVPTLLEPSLTMSSLDSGFSAIYIWLNLLSPCAM-RKL 396
P + ++ PT++E + ++ D +S W N SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 412 HGDNKLSQMYIAEKPLSRDDIVKEGSNKVGTNSIF 516
+G KL + E PLS +D++ GSN T+ +F
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELF 541
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 295 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 435
SLT+A SL + S+SVE + +L+ +L+ ++AN R G L Q
Sbjct: 16 SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 36 SAATLLTIANSLSRPFSKFLRSAVKSLWPC 125
SA TLL IA+ L + ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,580
Number of Sequences: 5004
Number of extensions: 39740
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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