Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d09
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...   146   2e-36
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   0.96 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.7  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   2.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   5.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   5.1  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    26   5.1  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   6.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   9.0  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score =  146 bits (354), Expect = 2e-36
 Identities = 74/137 (54%), Positives = 93/137 (67%)
 Frame = +2

Query: 215 GTDYNKILDSYANSGFQATNFGKTIVEINNMLKSRAVPLTEENSDCYEEDQFIKKKTNCT 394
           G    ++++SY   GFQATN    +  IN M   R     EE SD              T
Sbjct: 42  GITVEELVESYGKIGFQATNLHDAVTIINEMRNWRDPNPPEEKSD------------RAT 89

Query: 395 IFLGYTSNMISSGLRDTICFLVKNKLVDVIVTTAGGIEEDLIKCIAPTYVGDFNLSGKVL 574
           IFLGYTSN+ISSG+R+ + +LV++K VDVIVTTAGG+EED+IKC+ PTYVGDF+L GK L
Sbjct: 90  IFLGYTSNLISSGVREVLRYLVQHKCVDVIVTTAGGVEEDIIKCLGPTYVGDFHLDGKNL 149

Query: 575 RTRGINRIGNLLVPNDN 625
           R +G+NRIGNL+VPNDN
Sbjct: 150 RAKGLNRIGNLIVPNDN 166


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 179 ETPIVAGYDWENGTDYNKILDSYANSGFQATNFGKTIVE 295
           ET  +A   +ENG  + KIL+ Y+ S   +   G  +VE
Sbjct: 319 ETLPMALISYENGIAFEKILNEYSASSLNSVQDGGALVE 357


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 110 KPVKVAPNIAVNAVLQPSQDLPAETPIV 193
           +P+   PN+   A   PS  LP +TP++
Sbjct: 244 RPLSTKPNVVNGATHSPSPSLPFKTPLL 271


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 488 TTAGGIEEDLIKCIAPTYVGDFN 556
           T  G   ED+ KC+ P+Y G+F+
Sbjct: 23  TRIGFSGEDIPKCVLPSYCGEFS 45


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 180 SAGKSWLGCRTAFTAIFGATLTGFSTLHGISI 85
           ++G SWL  R+ FTAI  ++L   + LH  S+
Sbjct: 406 ASGLSWLTRRSVFTAILESSLI-INPLHSTSL 436


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 534 GAMHFIKSSSIPPAVVTITSTSLFLTKKQIVSLSPEDIMLEVYPRNIVQLVFF 376
           G   + +++S  PA   I   +LFL  KQ+V ++ +D ML    R I  LV F
Sbjct: 526 GVTRWNENTSDDPATYEIILQNLFLWCKQLVEINFKDPML--ITRLISVLVLF 576


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 266 ATNFGKTIVEINNMLKSRAVPLTEENS 346
           A N+GK I+   ++   + +P+TEE+S
Sbjct: 340 AENYGKQILFFVSIFHHQVIPMTEEHS 366


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 412 SVPEEYSTVSFLLNKLVFFITIAVFF 335
           + P +Y   S +LNKL++F TIA+ +
Sbjct: 569 TAPTKY-VYSQVLNKLIYFFTIAICY 593


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 296 INNMLKSRAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTS 415
           INN LK    P+ E N+D  +      KK++ T+ LG TS
Sbjct: 293 INNTLKPFEEPIAEGNADIEDWTFETVKKSDSTV-LGNTS 331


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 558 KLKSPT*VGAMHFIKSSSIPPAVVTITSTSLFLTKKQIVSLS 433
           ++ SPT V +   I SSS+  +   ITS+S+  T   I S S
Sbjct: 371 QITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSS 412


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 122 VAPNIAVNAVLQPSQDLPAETPIVAGYDWENGTDY 226
           V P ++  A+L    DLP    ++A Y W +G ++
Sbjct: 6   VEPLLSKAAILNKYADLPQNGKVMAEYIWIDGFNH 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,325
Number of Sequences: 5004
Number of extensions: 54384
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)