Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d09
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0150 - 15150169-15150228,15150294-15150529,15151844-151520... 162 2e-40
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 159 1e-39
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 30 1.7
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 30 1.7
03_01_0195 - 1548204-1548257,1548547-1548642,1548726-1548770,154... 29 3.0
04_04_1030 - 30249160-30250403,30250787-30251666 27 9.2
01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577 27 9.2
>09_04_0150 -
15150169-15150228,15150294-15150529,15151844-15152063,
15152218-15152385,15152969-15153214
Length = 309
Score = 162 bits (394), Expect = 2e-40
Identities = 84/162 (51%), Positives = 114/162 (70%), Gaps = 3/162 (1%)
Frame = +2
Query: 149 VLQPSQDLP-AETPIVAGYDWEN-GTDYNKILDSYANSGFQATNFGKTIVEINNMLKSR- 319
VL+PS+ L +AG D+ + G + +L S A +GFQA+N G + +N ML+ R
Sbjct: 28 VLKPSESLDEGRFTRIAGADFNDAGLGLSGMLASLATTGFQASNLGDAVDVVNQMLEWRL 87
Query: 320 AVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTICFLVKNKLVDVIVTTAG 499
+ E+ D E D ++ C IFLG+TSN++SSG+RD + FLV++ +VDVIVTTAG
Sbjct: 88 SHEKPREDCDEPELDPTYRESVKCKIFLGFTSNLVSSGIRDVVRFLVQHHMVDVIVTTAG 147
Query: 500 GIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDN 625
GIEEDLIKC+APTY GDF+L G +LR++G+NRIGNLLVPNDN
Sbjct: 148 GIEEDLIKCLAPTYRGDFSLPGTLLRSKGLNRIGNLLVPNDN 189
>03_05_1076 +
30180923-30181150,30181746-30181913,30182063-30182281,
30182827-30182872,30183708-30183943,30184065-30184079,
30185749-30186061,30186189-30186403,30186598-30186600
Length = 480
Score = 159 bits (387), Expect = 1e-39
Identities = 83/162 (51%), Positives = 112/162 (69%), Gaps = 3/162 (1%)
Frame = +2
Query: 149 VLQPSQDLP-AETPIVAGYDWEN-GTDYNKILDSYANSGFQATNFGKTIVEINNMLKSR- 319
VL+PS+ L +AG D+ + G +L S A +GFQA+N G + +N ML R
Sbjct: 22 VLKPSESLDEGRFTRIAGADFNDAGLGLPGLLASLATTGFQASNLGDAVDVVNQMLDWRL 81
Query: 320 AVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTICFLVKNKLVDVIVTTAG 499
+ E+ D E D ++ C IFLG+TSN++SSG+RD + FLV++ +VDVIVTTAG
Sbjct: 82 SHEKPREDCDEAELDPTYRESVKCKIFLGFTSNLVSSGIRDVVRFLVQHHMVDVIVTTAG 141
Query: 500 GIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDN 625
GIEEDLIKC+APTY G+F+L G +LR++G+NRIGNLLVPNDN
Sbjct: 142 GIEEDLIKCLAPTYRGEFSLPGTLLRSKGLNRIGNLLVPNDN 183
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 359 EDQFIKKKTNCTIFLGYTSNMISSGL-RDTICFLVKNKLVDVIVTTAGG 502
++ ++ ++NC+ + Y + ISSG+ DT C L +L+D+ T GG
Sbjct: 698 DECMVECRSNCSC-VAYAYSNISSGIIDDTRCLLWTGELIDMEKVTQGG 745
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 455 LVKNKLVDVIVTTAGGIEEDLIKCIAPTY--VGDFN 556
++ ++ D + T I ED+IKCIA Y + DFN
Sbjct: 245 ILGTRIADHVPQTPNKISEDMIKCIASIYIRIRDFN 280
>03_01_0195 -
1548204-1548257,1548547-1548642,1548726-1548770,
1549063-1549251,1549512-1549607,1550163-1550216,
1550566-1550582,1550701-1550797,1551604-1551681,
1551908-1551976,1552084-1552167,1552282-1552353,
1552757-1552831,1552915-1552990,1553080-1553141,
1553231-1553315,1553411-1553475,1554431-1554474,
1554733-1554988
Length = 537
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 455 LVKNKLVDVIVTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLL 610
L+K+ +V ++ TAGGI + C+ + + L+G ++ G+N I ++
Sbjct: 172 LIKDLVVIIVSATAGGI---IFSCLGQPVIVGYLLAGSLVGPGGLNFISEMV 220
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 311 KSRAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSN 418
+SR + +ENS CYE + + NC+ GYT N
Sbjct: 254 RSRQTYMCKENSYCYEVEDGAGYRCNCS--GGYTGN 287
>01_05_0405 - 21866058-21866255,21866711-21867172,21867389-21867577
Length = 282
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 210 KMELITIKYSILTLTPDFRPRISVKLSSKSII 305
K+EL+TI ++L TPD+ ++SV S + +
Sbjct: 222 KVELVTINKALLGDTPDYHGKLSVTPQSGTAV 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,411
Number of Sequences: 37544
Number of extensions: 308895
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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