Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d09
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-6|CAA19451.1| 371|Caenorhabditis elegans Hypothetical ... 155 2e-38
AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical ... 31 0.89
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 31 0.89
AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like ... 29 3.6
Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81564-3|CAB04577.1| 536|Caenorhabditis elegans Hypothetical pr... 27 8.3
U40419-7|AAL02444.1| 413|Caenorhabditis elegans Hypothetical pr... 27 8.3
AC006638-6|AAK85484.2| 160|Caenorhabditis elegans Hypothetical ... 27 8.3
>AL023828-6|CAA19451.1| 371|Caenorhabditis elegans Hypothetical
protein Y17G7B.4 protein.
Length = 371
Score = 155 bits (376), Expect = 2e-38
Identities = 77/168 (45%), Positives = 114/168 (67%), Gaps = 4/168 (2%)
Frame = +2
Query: 134 IAVNAVLQPSQDLPAETPIVAGYDWE--NGTDYN--KILDSYANSGFQATNFGKTIVEIN 301
+A AVL S +P + + G+D+ +G D++ IL SY ++GFQAT+ + I ++N
Sbjct: 15 LAQGAVLVKSCQVPDGSIPIRGFDFSTASGPDFSLSAILSSYMSTGFQATHLAQAIQQVN 74
Query: 302 NMLKSRAVPLTEENSDCYEEDQFIKKKTNCTIFLGYTSNMISSGLRDTICFLVKNKLVDV 481
ML R PLT ++ + ++K +CTIFLGYTSN+++SGLR+ + + V+ LVD
Sbjct: 75 QMLSLRDTPLTCDDDEKLFPYPEGRQKRSCTIFLGYTSNLVTSGLREVLRYCVQRNLVDC 134
Query: 482 IVTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDN 625
IVT+AGGIEEDLIKC+ P+Y+G F + G LR+ G+NR GN+L+PNDN
Sbjct: 135 IVTSAGGIEEDLIKCLKPSYLGTFTMDGAKLRSNGMNRAGNVLIPNDN 182
>AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical
protein R155.1b protein.
Length = 341
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 206 WENGTDYNKILDSY--ANSGFQATNFGKTIVEINNMLKSRAVPLT 334
WE G DYN +++S+ + F + + + +NN L S + L+
Sbjct: 169 WETGHDYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLS 213
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 206 WENGTDYNKILDSY--ANSGFQATNFGKTIVEINNMLKSRAVPLT 334
WE G DYN +++S+ + F + + + +NN L S + L+
Sbjct: 301 WETGHDYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLS 345
>AF067609-10|AAC17537.1| 163|Caenorhabditis elegans Ground-like
(grd related) protein20 protein.
Length = 163
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 505 DPSSCSHNHIHKLIFN*KTDRVSQSRGYHVRSVPEEYSTVSFLL 374
+ S C+ + K+I N S+SR V S+ E+Y+ V +L+
Sbjct: 86 EDSKCTDPELRKIILNGVRTTTSESRDNIVASLKEKYAGVRYLV 129
>Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical
protein F47H4.6 protein.
Length = 488
Score = 28.3 bits (60), Expect = 4.8
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Frame = +2
Query: 212 NGTDYNKILDSYANSGFQATN--FGKTIVEINNMLKSRAVPLT-----EENSDCYEEDQF 370
+ T +NK Y G + ++V N LK R + LT ++ DCYE +
Sbjct: 264 DSTSHNKDQGMYIKDGSHSKMALHDWSVVMQNQKLKLRELTLTLAMESYKHQDCYETIKT 323
Query: 371 IKKKTNCTI-----FLGYTSNMISSGLRDTICFLVKNKLVDVIVTTAGGIE 508
+ +K+NC G+T +S LR+ V N +V T + GIE
Sbjct: 324 VLRKSNCLFVEKITLEGFTFREVSEVLRNCKP-RVLNMIVLNSSTESNGIE 373
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 72 IFQINYP*YP-YINQRPNRKYFNL 4
IFQ+N+ Y Y+N PN+ Y NL
Sbjct: 41 IFQVNFKQYAGYLNSDPNKNYNNL 64
>Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 95 PCNVEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYD 205
P E+P K+ PN A + P + + P +GYD
Sbjct: 37 PIAAERPSKIFPNKARSGFKTPLRSINTTDPSTSGYD 73
>Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 95 PCNVEKPVKVAPNIAVNAVLQPSQDLPAETPIVAGYD 205
P E+P K+ PN A + P + + P +GYD
Sbjct: 37 PIAAERPSKIFPNKARSGFKTPLRSINTTDPSTSGYD 73
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 72 IFQINYP*YP-YINQRPNRKYFNL 4
IFQ+N+ Y Y+N PN+ Y NL
Sbjct: 41 IFQVNFKQYAGYLNSDPNKNYNNL 64
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 72 IFQINYP*YP-YINQRPNRKYFNL 4
IFQ+N+ Y Y+N PN+ Y NL
Sbjct: 41 IFQVNFKQYAGYLNSDPNKNYNNL 64
>Z81564-3|CAB04577.1| 536|Caenorhabditis elegans Hypothetical
protein K05C4.3 protein.
Length = 536
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 386 NCTIFLGYTSNMISSGLRDTICFLVKNKLVDVIVTTAGGIEE 511
N T L T I+ GL+++IC ++ N + V GG +E
Sbjct: 304 NLTYTLNRTDTDITRGLKESICTIMSNPETCLHVIENGGAKE 345
>U40419-7|AAL02444.1| 413|Caenorhabditis elegans Hypothetical
protein C27F2.10 protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Frame = -3
Query: 550 ITYIGRSDAFYQVFLDPSSCSHNHI--HKLIFN*KTDRVSQSRGYHVRSVPEEYSTVSFL 377
I I + Y FL ++N+ K +F+ + +S Y R+ P + ++S
Sbjct: 203 IRAIDNCGSLYHDFLMSDKVAYNYFLGRKAMFDADLNLAEKSLLYAFRNCPAD--SMSNK 260
Query: 376 LNKLVFFITIAVFFG*RNRSAFEHIIDFDDSFTEIRGLKSGVSVRIEYFIVISSIF 209
L++ I + +F G S H D+ + G+K G +++ + + F
Sbjct: 261 RKILIYLIPVKMFLGHMPTSQLLHEYRLDEFQDVVAGVKDGNLAQLDGALAANEAF 316
>AC006638-6|AAK85484.2| 160|Caenorhabditis elegans Hypothetical
protein F41G4.4 protein.
Length = 160
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -1
Query: 501 PPAVVTITSTSLFLTKKQIVSLSPEDIMLEVYPRNIVQLVFFLI---NWXXXXXXXXXSV 331
PPA + ++Q+ L P+D+++ P ++ Q FL+ +W V
Sbjct: 28 PPAALKAYQARNTWMQQQLTGLKPKDVLVGFEPNDVKQYYRFLLAATHWLWKVIKAKMIV 87
Query: 330 NGTA 319
N TA
Sbjct: 88 NVTA 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,367
Number of Sequences: 27780
Number of extensions: 299585
Number of successful extensions: 946
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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