Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d06
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    27   2.6  
11_06_0512 - 24460391-24462337                                         26   7.8  
08_01_0182 - 1534448-1534557,1534925-1535987                           26   7.8  
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913...    26   7.8  

>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 133 AKDLTMKQKKQFVAAAIRPLTQIRLNT 53
           AK +  K KK F  AAI PLT + ++T
Sbjct: 279 AKYIAKKNKKLFWVAAIAPLTSVIIST 305


>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = -2

Query: 266 GENVESCLLLQRTCRQDXNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRG- 90
           GE  E  +L  R C     LA+    +     L  ++  LL +M +GFN  ++  V +G 
Sbjct: 388 GELAELVVLDLRACHDLQVLAKEITKLQKLQYLDVSECYLLVDMPEGFNKMSQLQVLKGF 447

Query: 89  ----SNPAANPNSPQYVDISDL 36
               SN     N  + V +S+L
Sbjct: 448 LVVNSNKRNTCNLGELVSLSNL 469


>08_01_0182 - 1534448-1534557,1534925-1535987
          Length = 390

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -2

Query: 149 LLTNMCQGFN---YETEKTVCRGSNPAANPNSPQYVDISDLPAGQ--TIMCIEP 3
           LL ++  GF+   Y   + VC     A  P SP  + + D  AGQ     C+ P
Sbjct: 12  LLVHIAGGFSIQAYTRLRGVCAAWRDALRPPSPSLLVLRDRHAGQRFAAWCVSP 65


>07_03_0100 +
           13389899-13390219,13390723-13390841,13391220-13391315,
           13391481-13391553,13392055-13392123
          Length = 225

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 99  LSRQQSGR*PKFASIRRYQRSSCGPNNHVH 10
           LSR  + R P     RRY+ S+ GP   +H
Sbjct: 21  LSRVNARRSPSLDQRRRYRASTAGPPQSLH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,224,804
Number of Sequences: 37544
Number of extensions: 149261
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)