Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d06
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 27 3.1
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 27 3.1
U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4... 27 3.1
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 27 3.1
U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 25 9.5
U46670-4|AAC48175.1| 332|Caenorhabditis elegans Suppressor prot... 25 9.5
U43891-1|AAB61087.1| 332|Caenorhabditis elegans SUP-10 precurso... 25 9.5
AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine r... 25 9.5
AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical ... 25 9.5
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 209 LAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 60
L Q ++ C DP ++P + ++ ++ C GSNPA P P
Sbjct: 1017 LVQGEIAQC--DPFNPPNAPCPSEFTCQWSLSNQRYQCCGSNPAPTPQRP 1064
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 125 FNYETEKTVCRGSNPAANPN 66
+N++T + + SNPAANPN
Sbjct: 1226 WNFKTVQEKTKSSNPAANPN 1245
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 540 KETPCWIEVTLHRPLQILDQLLKNSSQF 567
>U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4,
isoform b protein.
Length = 189
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 159 KETPCWIEVTLHRPLQILDQLLKNSSQF 186
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 535 KETPCWIEVTLHRPLQILDQLLKNSSQF 562
>U41510-6|AAK39382.1| 454|Caenorhabditis elegans Hypothetical
protein ZC449.1 protein.
Length = 454
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 194 VNICSRDPLLA-NDSPLLTNMCQGFNYETEKTVCR 93
+ +C++ ++A + P ++C+ F YE +K +CR
Sbjct: 46 LTMCTQHCIMAAGNGPEGGSICKAFTYELDKQLCR 80
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 140 NMCQGFNYETEKTVCRGSNPAANPNS 63
+ CQ F + + C G P NPNS
Sbjct: 410 DQCQNFCLHSADSACDGLVPLKNPNS 435
>U46670-4|AAC48175.1| 332|Caenorhabditis elegans Suppressor protein
10 protein.
Length = 332
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 260 NVESCLLLQRTCRQDXNLAQSDVNICSRDPLLANDSP 150
+++ +LL+ +D N+ SD + CS LL D P
Sbjct: 142 SLDQLILLEPRVYEDLNVILSDTSNCSSKYLLLADRP 178
>U43891-1|AAB61087.1| 332|Caenorhabditis elegans SUP-10 precursor
protein.
Length = 332
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 260 NVESCLLLQRTCRQDXNLAQSDVNICSRDPLLANDSP 150
+++ +LL+ +D N+ SD + CS LL D P
Sbjct: 142 SLDQLILLEPRVYEDLNVILSDTSNCSSKYLLLADRP 178
>AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine
receptor, class w protein91 protein.
Length = 350
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 90 AATNCFFCFIVKS 128
A+TNCF CF++ S
Sbjct: 324 ASTNCFICFLMSS 336
>AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical
protein F18A12.5 protein.
Length = 700
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 210 IAVLTTSALQ*QTGLDVFSGVSTLHIITSAGSIDG 314
I+ LTT TGLDVF+ V+ +IT++ G
Sbjct: 286 ISSLTTQMALKSTGLDVFNHVNQRTLITNSSLFFG 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,976,844
Number of Sequences: 27780
Number of extensions: 129763
Number of successful extensions: 472
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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