Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14d03
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 2.8
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 4.9
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 4.9
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 4.9
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 4.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.5
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 6.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 6.5
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 6.5
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 6.5
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 398 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 231
+V S + L + + NI GTLT + ++W+ + N + + WY
Sbjct: 4 RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 500 TIMEY*SCYHCRLDG*KCSFTPCTEWETHYIAI 402
T +E YHC ++G K SFT + + H I
Sbjct: 228 TTLEERKTYHCPMEGCKKSFTRSSALKKHISVI 260
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 357 YGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAM 473
YGV L + A AY Y MG+P + E ++ A+
Sbjct: 309 YGVSLNHSSSKAAIAYMYFMGYPVAENTESITKLLENAL 347
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSY-VMGFPFSAWGEGTF 452
PQI K ++KS EG++I ++ L A N +Y++ ++ FP S + T+
Sbjct: 195 PQIIKNHKAKSTEGLSI--IFFVL-ASVGNTSYAFSILVFPASDYLNYTY 241
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 85 IFNTCVRIYFYLFLLKHARSFR 20
IF CV Y F+LKHA+ +R
Sbjct: 217 IFFGCVIGYLLSFILKHAQKYR 238
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 401 SKVRSDSKQLQINSIN--IDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWYI 228
S+ R+ K L + +N + + T L +FEN ++ P + DS +F+ W++
Sbjct: 2358 SRYRAVKKILDLLKVNQGLSNLVTKLLCSFENYVSLAEWNPRSKVDSTSFSRFPGYKWFL 2417
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -1
Query: 355 ILIPSALLLCKILKICGTFTSMDPRMMPIPRPLLSVDLKHGTSRKLYFRKYSL*HF*DNT 176
IL + LLC+ L + + + PIPRP L LK+ F +S+ F +
Sbjct: 27 ILDLNGTLLCRALAVRSEKSVYEASRNPIPRPGLHNFLKY------IFANFSVMVFSSSK 80
Query: 175 PNNNPFKISAM 143
P+N +SA+
Sbjct: 81 PHNVQAMLSAI 91
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +2
Query: 176 GVVSKVLQRILSKVQFS*CTMFQIHTQQRSRNRHHSRVHTGKSATNFQNFTK 331
G+ ++ R++S+++ + Q H Q+ S ++HH + S++ + K
Sbjct: 524 GMSMEMANRVISEIRTTKIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDK 575
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 156 LKGLLLGVLSQKCYNEYFLKYN 221
L LLLG+LS+ Y EY ++ N
Sbjct: 506 LSDLLLGILSEIKYYEYLVRKN 527
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 355 ILIPSALLLCKILKICGTFTSM 290
I I SALLLC IL FTS+
Sbjct: 453 IYIVSALLLCTILPSAVAFTSL 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,235
Number of Sequences: 5004
Number of extensions: 44976
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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