Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14d03
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    27   7.8  

>U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical
           protein F38E1.9 protein.
          Length = 238

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 35/120 (29%), Positives = 53/120 (44%)
 Frame = +3

Query: 144 MAEILKGLLLGVLSQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKI 323
           M +I++ L  G     C+ E  + +NF    C K+                   PQI KI
Sbjct: 1   MNDIIQSLFPG----NCFEELLINFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKI 56

Query: 324 LQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGG 503
             ++SA+GI+     L L       +YSY  GF FS WG+  F+A+Q  +I   +  + G
Sbjct: 57  QAARSAQGISAASQLLALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSG 116


>Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical
           protein C50B8.3 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 477 LSLPFGWLKMFLHPMH*MGNPLHSYK 400
           LS+ F W   F HP+H  G P   Y+
Sbjct: 239 LSMDFTWGDSFSHPLHTHGGPYWQYE 264


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 352 LIPSALLLCKILKI-CGTFTSMDPRMMPIPRPLLSVDLKHGTSRKL 218
           LI S L+LC +LKI  G+ T +    MP+P+    V L    S KL
Sbjct: 27  LILSPLILCALLKIDFGSPTGVSHLTMPVPQSEQLVKLLEVQSVKL 72


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 375 LFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVL 491
           +FAITA F    ++  PF  W +  F     A+I  LV+
Sbjct: 42  MFAITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVV 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,800
Number of Sequences: 27780
Number of extensions: 248899
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)