Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c24
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...   105   5e-24
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    39   5e-04
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    38   8e-04
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    33   0.023
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    32   0.040
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    32   0.040
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   6.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.1  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    25   8.0  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score =  105 bits (251), Expect = 5e-24
 Identities = 57/133 (42%), Positives = 78/133 (58%), Gaps = 22/133 (16%)
 Frame = +3

Query: 153 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEA-------------------PADAG--- 266
           LP  W ++ SRS    Y+ NT T +S WE P A                   P +A    
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65

Query: 267 EVRCSHILVKHAESRRPTSWREEKITRTKEEALELIKGYRKQIVANDAQFDEIALKYSDC 446
           ++R SH+LVKH ESRRP+SW+EE ITR+KEEA +L + Y + + +      ++A+K SDC
Sbjct: 66  KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125

Query: 447 SSAKRGGDLGMFG 485
           SSA+RGG+LG FG
Sbjct: 126 SSARRGGELGEFG 138


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 150 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 257
           PLP GWEMR + +T   Y+++  TK + W+ P  P+
Sbjct: 346 PLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS 380



 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 153 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 266
           LP GWE RT  + G TYY++  T+ + W RP   + AG
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRPNLSSVAG 243


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 150 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 257
           PLP GWEMR + S    Y+++  TK + W+ P  P+
Sbjct: 365 PLPSGWEMRLTNS-ARVYFVDHNTKTTTWDDPRLPS 399



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 90  RNLHLPA*ILNIRMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAP 254
           +N HLP       M +++   LP GWEMR +  TG  Y+++  T+ + W  P  P
Sbjct: 287 QNRHLPDDSNPSLMQSDSGNDLPFGWEMRYT-DTGRPYFVDHNTRTTTWVDPRNP 340



 Score = 35.5 bits (78), Expect = 0.004
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 153 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 245
           LP GWE R   S G TYY++  T+ + W RP
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 33.1 bits (72), Expect = 0.023
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 245
           PLP GW    + S G+ YY N   KKS ++RP
Sbjct: 4   PLPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 245
           PLP GWEMR S    + Y+++  TK + W  P
Sbjct: 243 PLPAGWEMRLSEDYHV-YFVDHSTKTTTWSDP 273


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 159 DGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAGEVRCSHILVK-HAESRRPTSWREE 335
           D  E++T  S    YY N+ T+KS WE+PE   +  E + S +  K +A +     W   
Sbjct: 35  DWHEVKTEDSR--VYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN- 91

Query: 336 KITRTKEEALELIKGYRKQIVANDAQ 413
               T+E   ++   Y+  +V    Q
Sbjct: 92  --VNTRESVWDIPDEYKAALVDEPEQ 115


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 303 ESRRPTSWREEKITRTKEEALELI-KGY 383
           + R   +WR E++++TK   L++I  GY
Sbjct: 123 QERMKIAWRYEQVSKTKAPTLDMIPPGY 150


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +3

Query: 153 LPDGWEMRTSRSTGMTYYLN--TYTKKSQWERP 245
           LP GW  +     G  +Y+N      + QWE P
Sbjct: 10  LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 218 ISVEIVSHSC*SAGSHFPSIGQ--WWFIL--VRHS 126
           IS+E + H   + GSHF  + +  W F L  V+HS
Sbjct: 185 ISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHS 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,790
Number of Sequences: 5004
Number of extensions: 35740
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)