Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c21
         (186 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108676-1|AAI08677.1|  445|Homo sapiens hypothetical protein LO...    27   8.1  
AK131284-1|BAD18458.1|  445|Homo sapiens protein ( Homo sapiens ...    27   8.1  

>BC108676-1|AAI08677.1|  445|Homo sapiens hypothetical protein
           LOC392636 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 38  FGFYYFYLFINHVRILAGTGFSHHKAEQFCI*KNILHTTIK*LTSY 175
           FG+Y+F+   + V I+     +HH +E + +   +  + ++  TS+
Sbjct: 126 FGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSW 171


>AK131284-1|BAD18458.1|  445|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16237 fis, clone HCASM2002754. ).
          Length = 445

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 38  FGFYYFYLFINHVRILAGTGFSHHKAEQFCI*KNILHTTIK*LTSY 175
           FG+Y+F+   + V I+     +HH +E + +   +  + ++  TS+
Sbjct: 126 FGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSW 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,217,549
Number of Sequences: 237096
Number of extensions: 320226
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 76,859,062
effective HSP length: 41
effective length of database: 67,138,126
effective search space used: 1342762520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)