Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c21
         (186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    27   2.3  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical ...    26   4.1  
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 8   GLVVEARSRSFGFYYFYLFINHV 76
           GLV +     FG+ YF  ++NH+
Sbjct: 299 GLVFQVAYTDFGYLYFATYVNHL 321


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   LSGLVVEARSRSFGFYYFYLFINHVR 79
           LSG++V +  R   F  FY FI+H+R
Sbjct: 149 LSGMMVVSDKRQVPFDNFYGFIDHLR 174


>AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical
           protein T12B5.6b protein.
          Length = 317

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 38  FGFYYFYLFINHVRILAGTGFSHHKAEQFCI*KNILH 148
           F + Y YL  + V I +GT   ++ AE      N++H
Sbjct: 59  FDYIYLYLRKDEVEIWSGTEIIYNTAENDSSSSNVIH 95


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  LLRREAVLSVFIIFIYLSIMSASWQELASLI-TRLNNF 125
           ++RR  +L +F+  + + +   S+QEL   I T ++NF
Sbjct: 30  IMRRTKLLVIFLTLLIVVLFYYSFQELKKTIETDISNF 67


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 65  INHVRILAGTGFSHHKAEQFCI*KN 139
           I  +R+  GTG SHH A    +  N
Sbjct: 380 IEDLRVAGGTGSSHHTAAMLLVKHN 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,739,604
Number of Sequences: 27780
Number of extensions: 54956
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)