Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14c10
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 135 4e-33
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 57 2e-09
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 29 0.65
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 1.5
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 2.0
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 26 4.6
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 8.0
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 8.0
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 135 bits (327), Expect = 4e-33
Identities = 64/108 (59%), Positives = 85/108 (78%)
Frame = +3
Query: 252 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 431
AI KGN E ARI+A NAIR++ ++LN L++S+R+DAVSSR+QTA+T R V+ +MAGVV+
Sbjct: 17 AITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRG 76
Query: 432 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQ 575
MD AMK+MNLE IS +MDKFE+QF+D++VQ+ YM AM T PQ
Sbjct: 77 MDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQ 124
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/141 (22%), Positives = 63/141 (44%)
Frame = +3
Query: 123 GNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENA 302
G + + H +L A +EL+R + + GN ARI A +
Sbjct: 10 GGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDL 69
Query: 303 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLM 482
+R +N + ++ A+S R+QT T+ ++ SM G + + KSMN+ ++ +
Sbjct: 70 MRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARIT 129
Query: 483 DKFESQFEDLDVQSSYMENAM 545
+FE + E ++ + ++ M
Sbjct: 130 QQFERENEIMEQRQEMIDENM 150
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 28.7 bits (61), Expect = 0.65
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 396 KVTNSMAGVVKAMDAAM-KSMNLEKISTLMDKFESQFE 506
++ NS V K +DA+ S+NLEK+S L D+ + +F+
Sbjct: 250 QLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFD 287
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 456 NLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVP 572
++ +STL DK+ + DLD S Y E T T +P
Sbjct: 1291 SISSVSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMP 1329
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +3
Query: 291 AENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGV------VKAMDAAMKS 452
A N +RQK + L+ + + Q A+TT + N+MA V + + + K+
Sbjct: 65 AMNVLRQKKIYESQLQQLQQQSF--NMEQAAMTTESLKNTMATVQTMQETARQLKSQSKN 122
Query: 453 MNLEKISTLMDKFESQFE 506
+++EKI L D+ + +
Sbjct: 123 VSIEKIEKLQDEIQDYMD 140
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 432 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTT 560
++ A++S + E +S D+ S + LDV ++NA+ QT T
Sbjct: 203 LEKALES-DYEDVSIQFDRLASLDQALDVPIESIQNALQQTGT 244
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.0 bits (52), Expect = 8.0
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 258 QKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMD 437
Q+ + ARI E +R N LN+ ++ A + S ++ +L + V + M V A
Sbjct: 1820 QRDIVSAARISCEMLLRVINDLLNFSKLEAGKVTLESDLEFSLES-VVCDCMQSVYSA-- 1876
Query: 438 AAMKSMNL 461
A K +NL
Sbjct: 1877 CAEKGINL 1884
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 8.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 432 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMS 548
+ A+ EK + +ES F++ DVQ YM + S
Sbjct: 771 LSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRS 809
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,319
Number of Sequences: 5004
Number of extensions: 31619
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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