Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14c10
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0904 + 25832026-25832643 126 2e-29
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 66 3e-11
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 58 5e-09
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 30 1.5
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 29 2.0
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 28 6.2
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 27 8.2
>06_03_0904 + 25832026-25832643
Length = 205
Score = 126 bits (303), Expect = 2e-29
Identities = 58/139 (41%), Positives = 95/139 (68%)
Frame = +3
Query: 159 LFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLR 338
+F+LKF K L+R + AI+KGNM+GARI+AENAIR++ + +NYLR
Sbjct: 11 IFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIRKRTEHMNYLR 70
Query: 339 MSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDV 518
+++R+DAV +R+ T + + SMA +VK++D+A+ + NL+K+S MD FE QF +++V
Sbjct: 71 LASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDNFERQFVNMEV 130
Query: 519 QSSYMENAMSQTTTTTVPQ 575
Q+ +ME AM+ +T+ + P+
Sbjct: 131 QAEFMEGAMAGSTSLSTPE 149
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/123 (27%), Positives = 64/123 (52%)
Frame = +3
Query: 177 AVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSARVD 356
+++E+ER ++G M +I A++ IR ++Q + + +++
Sbjct: 25 SIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAKDLIRTRHQITKFYALKSQLQ 84
Query: 357 AVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYME 536
VS R+QT +T+ + +M GV KAM + MNL + +M +FE Q E +++ SS M
Sbjct: 85 GVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQKIMREFEIQNEKMEIVSSTMN 144
Query: 537 NAM 545
+A+
Sbjct: 145 DAI 147
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/94 (31%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Frame = +3
Query: 267 NMEGA-RIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAA 443
N +GA ++ A++ IR ++Q + ++ +++ VS RVQT +T+ + ++M GV KAM
Sbjct: 79 NGQGAVKVMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQM 138
Query: 444 MKSMNLEKISTLMDKFESQFEDLDVQSSYMENAM 545
+ +NL + +M +FE Q E +++ S M +A+
Sbjct: 139 NRQLNLPGLQRIMMEFERQNERMEMTSEVMGDAI 172
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +3
Query: 261 KGNMEGARIHAENAIRQKNQA---LNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 431
+G +EG R NAI+ + +A + + A++ + + + K SM+ V+K
Sbjct: 285 EGAVEGLRADVANAIKARREADGLVGEWKKKAQLFEIKLELANQSSILK-AESMSSVMKE 343
Query: 432 MDAAMKSMNLE--KISTLMDKFES 497
+DAA + ++ +I+ L DK ES
Sbjct: 344 LDAANALLQVKESQIALLHDKIES 367
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 285 IHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTR-KVTNSMAGVVKAMDAAMKSMNL 461
I E + +Q + SA + S++ T+ T++ KV S +A+ A +
Sbjct: 663 ISKEAKLASLSQPVGATSASASIQGSSAQASTSTTSQSKVVRSKK---RAVSVATSLRSN 719
Query: 462 EKISTLMDKFESQFEDL-DVQSSYMENAM 545
+K+S+L+DK+++ E+L D + E+A+
Sbjct: 720 KKVSSLVDKWKAAKEELRDEEDEEPESAL 748
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 282 RIHAE-NAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMN 458
++ AE N+++QK N +++ R +A + + T RK+ S +VK A S
Sbjct: 184 QLEAEVNSLKQKLVEYNKKQLALRANATAINDKKEETHRKIAKSDFELVKL--AQENSKL 241
Query: 459 LEKISTLMDKFESQFEDLDVQSSYMENA 542
L KI +K + E+ + ++NA
Sbjct: 242 LSKIVQSPEKLQRALEEKKTARAELKNA 269
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 282 RIHAENAIRQKNQALNYLRMSARVDAVSSRVQTAL--TTRKVTNSMAGVVKAMDAAMKSM 455
+I E + N + ++A++ + +++ T R+V+ +++A D A
Sbjct: 1021 KIEKEKTVELSNLEREVISLTAQLSSTEEERESSTLDTIREVS-----ILRA-DKAKLEA 1074
Query: 456 NLEKISTLMDKFESQFEDL 512
NLE ++ M +ESQ EDL
Sbjct: 1075 NLEDVNAQMIHYESQLEDL 1093
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,401
Number of Sequences: 37544
Number of extensions: 180487
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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