Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14c10
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical ... 173 6e-44
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 65 3e-11
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 47 8e-06
AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical... 30 1.0
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 5.5
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 5.5
AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical ... 28 5.5
>AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical
protein F23C8.6 protein.
Length = 205
Score = 173 bits (422), Expect = 6e-44
Identities = 84/152 (55%), Positives = 111/152 (73%)
Frame = +3
Query: 120 LGNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAEN 299
+G SS A+EKHLF+LKFA K+LE+N+ AI+KGN E A++HAEN
Sbjct: 1 MGAGESSMALEKHLFDLKFAAKQLEKNAQRCEKDEKVEKDKLTAAIKKGNKEVAQVHAEN 60
Query: 300 AIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTL 479
AIR+KN+A+NY++M+AR+DAV++RVQTA T ++VT SM+GVVKAM++AMKSMNLEK+ L
Sbjct: 61 AIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNLEKVQQL 120
Query: 480 MDKFESQFEDLDVQSSYMENAMSQTTTTTVPQ 575
MD+FE FEDLDV + ME M TT P+
Sbjct: 121 MDRFERDFEDLDVTTKTMEKTMDGTTVLNAPK 152
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/126 (26%), Positives = 64/126 (50%)
Frame = +3
Query: 168 LKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENAIRQKNQALNYLRMSA 347
L A++EL+R +K M+ ++ A++ +R + ++ M A
Sbjct: 22 LNKAIRELDRERARMEAQEKKVIADIKNMAKKNQMDSVKVMAKDLVRTRRYIKKFIVMKA 81
Query: 348 RVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQSS 527
+ AVS +VQT + + ++M GV KAM + + +NL +I +M +FE Q E +D++
Sbjct: 82 NIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEE 141
Query: 528 YMENAM 545
M +A+
Sbjct: 142 VMGDAI 147
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +3
Query: 261 KGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDA 440
KG+ + AR A+ ++ +NQ + MSAR+ V ++ + K+ ++M VK M A
Sbjct: 51 KGHNDAARHLAKQLVQLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKA 110
Query: 441 AMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAM 545
M LEK++ M +F+ E + + M + +
Sbjct: 111 MNAQMPLEKVAANMREFQMAQEKMGLTEEMMNDTL 145
>AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical
protein Y47H9C.11 protein.
Length = 372
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 453 MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTT 566
+ L +L KF ED D +SY+ENAM Q T T
Sbjct: 156 LKLNNQESLQQKFRKSDEDED-SNSYLENAMDQLETIT 192
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 462 EKISTLMDKFESQFEDLDVQSSYMENAM 545
EK+++L+D FE+ F L S ENA+
Sbjct: 305 EKVASLLDTFETLFNQLGELSKISENAL 332
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 368 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 499
QS+ S +G NG + +NG + + R+N Y NGQ RE+
Sbjct: 483 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 524
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 368 QSSNSINN*KGYKFNGRCSKSNGCSNEINELRENFYTNGQVRES 499
QS+ S +G NG + +NG + + R+N Y NGQ RE+
Sbjct: 385 QSNGSNGRWRGNNRNG--ATTNGYGYQQHNNRQNHYQNGQQREN 426
>AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical
protein R155.4 protein.
Length = 873
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 405 NSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFEDLDVQS 524
+S+A VK A + + + L+DKF SQ+ LD++S
Sbjct: 156 SSIADKVKGFKGAYVVPDGDPYTNLLDKFVSQYVTLDIES 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,857
Number of Sequences: 27780
Number of extensions: 176710
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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