Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c09
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   2.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    23   5.5  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    23   7.2  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    22   9.6  

>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 164 VQVPVFIFSVINSLFIVTH 108
           + +P F+F+ IN LF+  H
Sbjct: 227 LSLPAFVFNDINYLFVYVH 245


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 152 VFIFSVINSLFIVTHVTFLVDLTRLPQFWVKNSNFSRISY 33
           VFI SVI S++     T+ V L+ L  F        RI+Y
Sbjct: 470 VFIVSVILSIYFQLGSTYWVTLSYLCTFTCCIMTIIRINY 509


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 146 IFSVINSLFIVTHVTFLVDLTRLPQFWVK 60
           I S    L    H+T+L+D   + QF+ K
Sbjct: 377 IMSCFTLLISCAHITYLLDCHGIIQFYQK 405


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 116 VTHVTFLVDLTRLPQF 69
           V+ VT L+DLTR+P+F
Sbjct: 33  VSEVT-LLDLTRIPEF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,790
Number of Sequences: 5004
Number of extensions: 10589
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)