Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c09
         (219 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104...    29   0.51 
11_06_0605 + 25425964-25426293                                         26   3.6  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    26   4.7  
07_01_0601 + 4464745-4465010,4465274-4466582                           25   6.3  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    25   8.3  
01_03_0022 + 11724319-11725381,11725476-11725582                       25   8.3  

>02_01_0145 +
           1040798-1040934,1041152-1041194,1041999-1042076,
           1042444-1042544,1042900-1042994,1043161-1043229,
           1043432-1043501,1043757-1043820,1043907-1043947,
           1044098-1044182,1044608-1044682
          Length = 285

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 198 NCILLQVIKAPCTGTSIYFFCY*FTFYSNTCYFLSGF 88
           N ++L ++  P  G  + + C+ FTF++   ++   F
Sbjct: 124 NTLILPIVNGPTEGLMLIYLCHFFTFFTGAEWWAQDF 160


>11_06_0605 + 25425964-25426293
          Length = 109

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 76  GSLVKSTKKVTCVTIKSELITEKINTG 156
           GSLV ST KV  + +K EL+    N G
Sbjct: 79  GSLVGSTSKVMAMHLKGELVPMLKNAG 105


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 143 FSVINSLFIVTHVTFLVDLTRLPQFWVKNSNFSRISYK*SLAY*G 9
           + V +++ +  +  F++D+TRL    V  S   RIS K    Y G
Sbjct: 763 YDVTDAILMYDYFWFMLDVTRLLVVLVAGSERDRISLKALFGYYG 807


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 67  GLRIQISVGLAINNLWRIEE 8
           GLR + + G+A+N +W +E+
Sbjct: 481 GLRARFAPGMAVNFVWAVED 500


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  VKSTKKVTCVTIKSELITEKINTG 156
           +K +KKV C+T     I E +NTG
Sbjct: 283 MKMSKKVACLTKHPSNIRELLNTG 306


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 70  NCGSLVKSTKKVTCVTIKSELITEKINTGTCTRRFNY 180
           N GS   + K+VT   + +EL     N  TC   F+Y
Sbjct: 142 NNGSASMAAKRVTMDHVMTELSAAMTNQYTCLDGFDY 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,596,921
Number of Sequences: 37544
Number of extensions: 54714
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)