Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14c09
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    25   5.5  
AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    25   7.3  
Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.      25   9.6  
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    25   9.6  

>Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical
           protein F08G12.2 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  STKKVTCVTIKSELITEKINTGTCTRRF 174
           S+  V+C T KS  + + + TGTC RRF
Sbjct: 93  SSSLVSCGTDKSVRVWD-METGTCARRF 119


>AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical
           protein W06D4.2 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 143 FSVINSLFIVTHVTFLVDLTRLPQFWVKNSNF 48
           FS++ SLF + HVT L    ++   +VK+ NF
Sbjct: 226 FSIVISLFNIVHVTGLYIHFQVIMQFVKDKNF 257


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 162 TGTSIYF--FCY*FTFYSNTCYF 100
           +GT+I F  FC  F F+   CYF
Sbjct: 482 SGTTINFPIFCLIFAFFDKNCYF 504


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 152 VFIFSVINSLFIVTHVTFLVDLTRLPQFW 66
           +FIFS  N+L I+  V F+      P FW
Sbjct: 135 IFIFSRQNTLVIIGIVWFIAFCHIFPYFW 163


>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 192 ILLQVIKAPCTGTSIYFFCY*FTFYSNTCYFL 97
           +++ VI  P   T+IY + Y    YS++C FL
Sbjct: 181 LIVTVIGIPDKCTNIYLYEYLTWDYSDSCVFL 212


>Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical
           protein CC4.3 protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  CGSLVKSTKKVTCVTIKSELITEKINTGTCTRRFN 177
           C S  + ++ +   +I  ++   K+ TG C RRF+
Sbjct: 269 CISFSRDSEMLATGSIDGKIKVWKVETGDCLRRFD 303


>AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 73  CGSLVKSTKKVTCVTIKSELITEKINTGTCTRRFN 177
           C S  + ++ +   +I  ++   K+ TG C RRF+
Sbjct: 269 CISFSRDSEMLATGSIDGKIKVWKVETGDCLRRFD 303


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 43  LLKFEFLTQNCGSLVKSTKKVTCVTIKSELITEKINTGTCTRR 171
           LLK E+ + N     +   KV   T+  +L +EK+     TRR
Sbjct: 174 LLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRR 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,279,378
Number of Sequences: 27780
Number of extensions: 60234
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)