Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b24
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   3.3  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   5.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   10.0 
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    25   10.0 

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 349 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI 507
           L+ K+GV+ L+ K KLP++V  +  ++     + L    K+     +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 115 EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 288
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 311 LTTLSGAGVYGIDPDSLYVVLYFLS 237
           L+ L+    Y +DPD +Y +L FLS
Sbjct: 800 LSALASTIGYKLDPDDVYNILSFLS 824


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 154 NLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYK--TTYSESGSIPYTPAPDN--VVKQGD 321
           N+ ++F    ++ ++K+      V     K+    T Y++ GSI   P PD+  +V   +
Sbjct: 114 NIGLEFAEPHLSKAIKFSKIDTPVQPKTWKRQPGWTKYAKDGSISCVPYPDSDCMVFDVE 173

Query: 322 PLY-LQPHTVLIT 357
            LY + P  V+ T
Sbjct: 174 VLYKVSPFAVVAT 186


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 545 LSLANANFLFNSSITP---*FVSILTAGAYL 462
           +SL  +NFLF S ITP    F  ILT   YL
Sbjct: 74  ISLLQSNFLFFSGITPIRAIFDFILTGFIYL 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,188
Number of Sequences: 5004
Number of extensions: 39702
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)