Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b11
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.10 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   1.7  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   5.0  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   6.7  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    23   6.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    23   8.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.10
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 54  VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 146
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 248  LVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 126
            L+ + FKD+ +  + Y   ++ L + L +  + ++HS PIT
Sbjct: 1732 LLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 212 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 111
           I+ +KAH+N +NIK       F   +    +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 37  GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 132
           GH M   TD  YA+ C   ++++   + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 191 INELNIKLLSTSFVFKHSKPITIVKL 114
           I  +++ L   S V+KHS P+T ++L
Sbjct: 281 IRFMSLDLTKLSQVYKHSLPVTDMQL 306


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 50  PIVWPNRISNSRNII 6
           P + PN ISNSRN I
Sbjct: 444 PDLAPNMISNSRNFI 458


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 75  QIMLYGYIVCFSYEFY 122
           Q + Y  ++CFSY +Y
Sbjct: 216 QNLYYDLLLCFSYSYY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,204
Number of Sequences: 5004
Number of extensions: 15601
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)