Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b11
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    27   1.8  
01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402...    27   3.2  
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    26   5.6  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    26   5.6  
05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320     26   5.6  

>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 82  CYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTS 249
           C++V+ +      T+  G +C K+  +     F     ALY  +A ++ L   +T+
Sbjct: 211 CFLVVFYAGTKEPTLQSGSDCKKSARISWGYWFKK---ALYYQVALLYMLARLITN 263


>01_06_0401 +
          29038306-29038529,29038815-29038967,29039489-29040296,
          29040393-29040488,29040982-29041251
          Length = 516

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 91 PYNMIWHIDNPCTRPLCG 38
          PY  +WH+  P   PL G
Sbjct: 33 PYRKVWHVPGPVPLPLIG 50


>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 45  NGRVHGLSICQIMLYGYIVCFSYEFYYCYGFRMFE 149
           N  ++GL+I QI L G+I+ F +  Y  + + +F+
Sbjct: 381 NFSLYGLTINQITLPGWIMAFGWLVYLIWLWILFQ 415


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  MGAYTDYRYAKSCYMVILFVSVMSFTIV 129
           +  + D  YAK  Y + LF+  ++F IV
Sbjct: 557 LSGFYDVLYAKKGYYIFLFIQGLAFLIV 584


>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
          Length = 627

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 58  TDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKN 237
           TD+ YA    +++L +S   F   + ++CLKT       +F S      I+ ++ WS  N
Sbjct: 22  TDHYYAPLRLILLLILSATCFGSELDVQCLKT-------IFQSVTDPNGILKSS-WSFVN 73

Query: 238 NLTSFYASNLQSIQ 279
           N T  Y      ++
Sbjct: 74  NGTPGYICKFTGVE 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,513,948
Number of Sequences: 37544
Number of extensions: 76137
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)