Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b11
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    32   0.076
Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical p...    30   0.31 
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    30   0.31 
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   0.53 
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   2.2  
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       25   6.6  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    25   6.6  
AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical...    25   6.6  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    25   6.6  
Z81545-10|CAB04448.1|  170|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    25   8.7  
AL031627-25|CAA20971.1|  170|Caenorhabditis elegans Hypothetical...    25   8.7  
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    25   8.7  

>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +1

Query: 49  GAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL---YIMIAT 219
           G   DYRY    + +IL +  + F+I+M    L   +   ++ F S    +   Y M+ T
Sbjct: 40  GMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTHYQMVFT 99

Query: 220 VWSLKNNLTSFYASNLQSIQVV 285
           +W + N  T  + S L+  QVV
Sbjct: 100 LWCIGNTNTCIFISLLKRHQVV 121


>Z92829-14|CAB07342.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.8 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +1

Query: 79  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 258
           SCY +I+ +  + F           KLV  S+    F   L I+ A+VW L N+L +   
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158

Query: 259 SNLQSIQVVP 288
           S +Q   ++P
Sbjct: 159 SEIQDAILIP 168


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 55  YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 225
           Y +YR    +C++    + ++S    I+ G+ C    ++D+ L  +SF+CA+     T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171

Query: 226 SLKNNLTSF 252
            L   +T+F
Sbjct: 172 LLHERITTF 180


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +1

Query: 55  YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 234
           Y  +R   S Y+V+ F+S+  F     L      ++D  +   +F C +       W + 
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175

Query: 235 NNLTSFYASNLQSIQVV 285
             +  F  S+L +I  V
Sbjct: 176 EQVVFFVISSLSTILFV 192


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 245  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 135
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 245  VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 135
            +KL F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 227 DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 126
           D  V +I Y     ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 79  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 177
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 79  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 177
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical
           protein Y73C8C.12 protein.
          Length = 67

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 228 RPHCCNHNVQS 196
           RPHCC +++QS
Sbjct: 47  RPHCCRYSIQS 57


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 79  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 177
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>Z81545-10|CAB04448.1|  170|Caenorhabditis elegans Hypothetical
           protein F49H6.13 protein.
          Length = 170

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 166 SSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQ 270
           SSLM+ SF+C++ + I  + +  NN+     S+LQ
Sbjct: 54  SSLMYVSFLCSVLVFIQLIIT-SNNVRKNGYSHLQ 87


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 6   YDIS*IA-YSIRPHN--GRVHGLSICQIMLYGYIVCFSYEFYYCYGFRMFEN 152
           ++IS +A + + P+N    +   ++  ++  G ++CF Y  +  +G +++ N
Sbjct: 172 FEISSVARFIMMPYNENNTIQWKALSLLISAGILICFQYFIFVFFGLKIYFN 223


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  CQIMLYGYIVCFSYEFYYC 128
           C   +  Y+ CFS + YYC
Sbjct: 338 CNNYIQSYVNCFSTKCYYC 356


>AL031627-25|CAA20971.1|  170|Caenorhabditis elegans Hypothetical
           protein F49H6.13 protein.
          Length = 170

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 166 SSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQ 270
           SSLM+ SF+C++ + I  + +  NN+     S+LQ
Sbjct: 54  SSLMYVSFLCSVLVFIQLIIT-SNNVRKNGYSHLQ 87


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +1

Query: 37  GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 132
           GH +  YTDY  + + ++ +  V +M+  +++
Sbjct: 186 GHVISTYTDYYTSVAIFIAMSSVDIMTLILLI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,281,846
Number of Sequences: 27780
Number of extensions: 84296
Number of successful extensions: 279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)