Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b08
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.8  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.2  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.5  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   9.5  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 603 DPLLSQEDDTIESVDRASQQYQNSIASETAAQR---ALQRGLDLESQLMS 463
           DP L Q+    ++  +A+QQ     A + AAQ+   A Q+  ++E Q M+
Sbjct: 326 DPTLDQQLAAQQAAQQAAQQQAELAAQQAAAQQAQLAAQQAAEMERQRMA 375


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 639 YHVHGQVNISNDDPLLSQEDDTIESVD 559
           +H  G    S  DP+L +  DT++S++
Sbjct: 351 FHTSGSSKFSEQDPILIEAKDTLDSLE 377


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 508 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRD 645
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 508 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRD 645
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 149  LQKHLYVELSIIILT*HLKHTAWLQSIEVTNEE 247
            L+KH  +E   I    + K+  W QSIE++ ++
Sbjct: 1494 LEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQD 1526


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 207 TQHGYNQSKSQTKNLR 254
           T HGYNQ+K   K++R
Sbjct: 82  TVHGYNQAKKLAKSIR 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,818
Number of Sequences: 5004
Number of extensions: 38132
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)