Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b08
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0281 + 28155039-28155160,28155243-28155333,28155822-281558...    29   4.3  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   5.6  
02_04_0073 - 19471254-19472681                                         28   5.6  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   9.9  

>01_06_0281 +
           28155039-28155160,28155243-28155333,28155822-28155878,
           28156174-28156221,28156399-28156449,28156529-28156572,
           28156673-28156736,28156927-28157013,28157304-28157395,
           28157489-28157539,28158592-28158641,28158717-28158781,
           28158876-28159019,28159156-28159197
          Length = 335

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 276 TTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 181
           T +K+ K+V  ++ TS   +H VCF+ +  ++
Sbjct: 249 TIMKEYKSVQDAYKTSDKYSHTVCFRAFEHLL 280


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 489 NLAAEPSAQLSPTQCYSGTAEKHDPH 566
           N+AA  +AQ+ PTQC  G      PH
Sbjct: 600 NVAAVKAAQIVPTQCTDGLRSFGSPH 625


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 IVHNYPDITFETHSMVTIN 228
           I+H Y D+ FE HS + +N
Sbjct: 272 IIHGYQDLLFEKHSWIALN 290


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
           C IC   +KD      +F+T+  C H+ C+ C V  +   S   C
Sbjct: 60  CPICMAVIKD------AFLTA--CGHSFCYMCIVTHLSHKSDCPC 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,585
Number of Sequences: 37544
Number of extensions: 231523
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)