Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b08
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    40   0.002
AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical ...    35   0.044
AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    29   3.8  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    29   3.8  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      29   3.8  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    28   5.0  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    28   5.0  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   6.7  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   6.7  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 151
           C ICF    DT   DS  +  ++ C HA+C KC +  +++NST +C FC
Sbjct: 6   CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50


>AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical
           protein Y6D1A.2 protein.
          Length = 272

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
           C IC    +DTK         +DC H +C +C  RI      +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224


>AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical
           protein ZK1240.3 protein.
          Length = 304

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 121
           C IC    K+  N+D +    I  C H++C  C  ++I ++  Y  FC  ++   D +V 
Sbjct: 6   CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62

Query: 120 NKHGYVEFMPLTLIRNRDSIKQ 55
           N       M    I    + KQ
Sbjct: 63  NLKKNFGLMKAIEIMKNSTTKQ 84


>Z68751-4|CAA92974.1|  425|Caenorhabditis elegans Hypothetical
           protein T05E11.4 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -2

Query: 639 YHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASET 517
           YH   Q ++S DD   +++DD I+S   A +++QN I +++
Sbjct: 386 YHEDSQCSLSTDDDREAKDDDYIDS--DAEEKFQNMIDNDS 424


>AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical
           protein Y39B6A.10 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = -2

Query: 270 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 94
           LK T+N++ S +  +    A+C K  V + + D + ++ F   S    R+  K       
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165

Query: 93  PLTLIRNRDSIKQHWRELLENNTVNNRIIDF 1
            L ++R  +++KQ + ++L N+T    +I F
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLIYF 196


>AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.8 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 157
           C +C    +D  N+D S    +  C H++C  C V++I  NS   C
Sbjct: 6   CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47


>Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical
           protein Y53C12B.6 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 219 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 70
           NH V FKC +RI + N + +C    CS + S   +  K   V   P  L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 468 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 516


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 642 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
           T  +   +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 621 VNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 496
           +N+  DDPLL     T E +D  + Q +  +      +R ++
Sbjct: 449 LNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 490


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 151
           C IC  TL+ +  VD+     + C H++C  C  + +  N    C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -2

Query: 294 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 181
           SC IC+      K +   F     C H +C +C  +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 567 SVDRASQQYQNSIASETAAQRALQ 496
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 567 SVDRASQQYQNSIASETAAQRALQ 496
           S+D+A Q++ N + S+   QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 99  FMPLTLIRNRDSIKQHWRELLENNTVNNRII 7
           F+P+TL  N    K +W   LENN +N  I+
Sbjct: 310 FVPITLEGNVPGRKLYWWWRLENNDINFSIL 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,042
Number of Sequences: 27780
Number of extensions: 221707
Number of successful extensions: 749
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)