Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b05
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    30   0.33 
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    29   0.57 
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   1.7  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.7  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   2.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   5.3  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    26   5.3  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.0  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 259  ELVNSDKNFFNYIRDDINLEECITVPKYKHIVNVNLKSLRVFED-NNFDKNDVDLSD 92
            E+  SD +  N   +DIN +EC++         +NL+S     D N+F   +V LSD
Sbjct: 1742 EIYASDSDISNSTSEDINKDECVSKDIEVDNFALNLQSQSYEGDSNDFGIREVPLSD 1798


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 211 INLEECITVPKYKHIVNVNLKSLRVFEDNNFDKNDVDLSDT 89
           ++ + CIT+P    I    LK +R F++   +KN + LS++
Sbjct: 56  LDKDNCITLPNETTIAEAELKKIREFQNIYGEKNVILLSNS 96


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 139 VFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENAD 32
           VF+DNNF KN  D +    R   I PI++  ++  D
Sbjct: 212 VFKDNNFHKNATDAAHAVWRNIFIEPIVNRLAKYFD 247


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 444 PSFLLCMIGIVGSMTIPNFIFKNSCHPLKEKA 539
           P  L C++G   S   PNF+++N  HPL +++
Sbjct: 498 PEELRCLLGEQPSG--PNFVYENETHPLYQQS 527


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -1

Query: 346 GKTKFDESHEDLFILKMADGTVVTCKVNGELVNSDKNFFNYIRDDINLEECITVPKYKHI 167
           G+T  D+S +D+  L    GT+VT  +  +      + F+ I+        +   K    
Sbjct: 100 GETSSDDSTDDIAFLNEKMGTLVTTPIGSQKYFGSSSTFSIIQHAAKFASGVESDKVLEH 159

Query: 166 VNVNLKSLRVFEDNNFDKNDVDL 98
           +++         D +FD +  +L
Sbjct: 160 LSMAKSGCLFDPDESFDGSKAEL 182


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 148 SLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSENAD 32
           S  V+EDNN D+N  + + T  R   + PI +  ++  D
Sbjct: 209 SCPVYEDNNIDENTTEAAHTSWRNVFLKPIANRLNKYFD 247


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 274  CKVNGELVNSDKNFFNYIRDDINLEECITVPK-YKHIVNVNLKSLRVFED 128
            C+ +G +  + K+    + DD NL+  + + K +  IV  NLK L   +D
Sbjct: 1513 CRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANLKFLWAVDD 1562


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 634 WKIFSRAPTPGYINKCVQAGDYYYW 560
           ++ +SRA   G I+   + GDYYY+
Sbjct: 552 YEFYSRAAAQGDIDAIFKLGDYYYY 576


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 216 TTLIWKNALRCPNTSILSTSTSKASECS 133
           TTL W NAL C N ++L  S+S ++ C+
Sbjct: 213 TTLSWINALYC-NGNLLYPSSSISATCT 239


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/92 (26%), Positives = 39/92 (42%)
 Frame = -1

Query: 466 IIHNKKLGPVDLFVFDPKYFLNVELSLRTNHDPPQTLFVNGKTKFDESHEDLFILKMADG 287
           I  +K L P+DL + DP Y    E+       PP  L ++     DE + ++  LK    
Sbjct: 591 ISRDKNLSPLDLELDDPTYSDEEEVLFA----PPGDLQLS--ESIDELNNNIEELKAQLN 644

Query: 286 TVVTCKVNGELVNSDKNFFNYIRDDINLEECI 191
            + T     ELV   K   +  ++   +E+ I
Sbjct: 645 AINTLIKKAELVADQKQLKSLTKNHQEIEKAI 676


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 631 KIFSRAPTPGYINKCVQAGD-YYYWPNWPKGQ 539
           ++FS  P PG+   C+ A   +  W +W   Q
Sbjct: 95  RVFSTKPVPGFPQGCLGASQPHREWASWSLNQ 126


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = -1

Query: 520 WQLFLNIKFGIVIEPTIPIIHNKKLGPVDLFVFDPKYFLNVELSLRTNHDPPQTLFVNGK 341
           W+L      G +    IP + N      +    +P+   +VE+ LR   +P    F+ G+
Sbjct: 340 WELQQLAASGAISATDIPEL-NDGFNTNNAAEINPEDDEDVEIELR-EEEPG---FLAGQ 394

Query: 340 TKFDESHEDLFILKMADGTVVTCKVNGELVNSDK 239
           TK       + ++K  DG++    + G+++ +D+
Sbjct: 395 TKVSLKLSPIKVVKAPDGSLSRAAMQGQILANDR 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,998
Number of Sequences: 5004
Number of extensions: 62169
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)