Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b05
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0393 + 17255315-17256019,17256107-17257909                       32   0.45 
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    31   1.0  
02_03_0356 + 18073794-18074052,18074054-18074163                       29   3.1  
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430...    27   9.6  

>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 163 NVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASSEN 38
           N++  S+ V   +N D N VD+  + +  P  + ++S+S+E+
Sbjct: 52  NIDPNSVNVLSSSNIDPNSVDILSSSNIDPNSIDVLSSSNES 93



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 163 NVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASS 44
           N++  S+ +   +N D N VD+  + +  P  V ++S+S+
Sbjct: 26  NIDPNSVDILSSSNIDPNSVDILSSSNIDPNSVNVLSSSN 65



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 166 VNVNLKSLRVFEDNNFDKNDVDLSDTRSRKPRIVPIISASS 44
           V ++  S+ V   +N D N VD+  + +  P  V I+S+S+
Sbjct: 12  VPIDPNSVDVLSSSNIDPNSVDILSSSNIDPNSVDILSSSN 52


>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
            21354741-21356354,21356446-21356553,21356649-21357509,
            21357586-21357632,21358591-21358697,21359512-21359630,
            21359706-21359915,21360412-21360693,21360820-21360952,
            21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 412  YFLNVELSLRTNHDPPQTLFVNGKTKFDESHEDLFI 305
            YFLNV + L  N    +  F+ G++ FD  HEDL I
Sbjct: 1330 YFLNVIIQLLWNLRHFRNEFLRGRSTFDIVHEDLCI 1365


>02_03_0356 + 18073794-18074052,18074054-18074163
          Length = 122

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 186 CPNTSILSTSTSKASEC--SKXXXXXXXXXXXXTRVPENRASYPLYR--RAAKMQTT 28
           CP+ SIL+T  S AS C  SK            +R P  R+++P     R++K ++T
Sbjct: 39  CPDASILATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSKREST 95


>02_01_0580 +
           4303020-4303211,4303838-4303879,4304538-4304646,
           4304731-4304859,4305002-4305121,4305223-4305343,
           4305888-4306044,4306377-4306427,4306573-4306695
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 294 PTVLWLRAKLMVSWSIRIKIF-SITLGTTLI 205
           P +LW++  L  SWS+ + +   I +GT+LI
Sbjct: 63  PKLLWVKENLQESWSMELGLRPGIPVGTSLI 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,694,096
Number of Sequences: 37544
Number of extensions: 373033
Number of successful extensions: 917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)