Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b03
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...   111   1e-25
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    77   3e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    48   1e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.25 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   1.8  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    27   3.1  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    26   5.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.4  

>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score =  111 bits (266), Expect = 1e-25
 Identities = 50/68 (73%), Positives = 55/68 (80%)
 Frame = +1

Query: 109 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 288
           +NPKPFL  L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG  TG+LGE+LI
Sbjct: 6   VNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILI 65

Query: 289 RCNNVLYV 312
           RCNNVL+V
Sbjct: 66  RCNNVLWV 73


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 37/71 (52%), Positives = 45/71 (63%)
 Frame = +1

Query: 112 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 291
           +P  FLN + GK VL++L  G +YKG+L   DGYMNL L  TEE V+G  T   G+  IR
Sbjct: 4   SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63

Query: 292 CNNVLYVRGAD 324
            NNVLYV   D
Sbjct: 64  GNNVLYVSALD 74


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 291
           P   LN+  G+ +LV+LK G  + G L + D YMNL L      + DG     L E  IR
Sbjct: 3   PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62

Query: 292 CNNVLYVRGAD 324
            NN+ Y+R  D
Sbjct: 63  GNNIKYLRIQD 73


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 133 SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 243
           SL   S+ V  K G  + G L++ DG+MNL L++ +E
Sbjct: 8   SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 151 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 249
           V VKL+   E  G L + D ++N+ L + EE+V
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 446 YYSVSSKITLGIYPEILMIEEKNVNWNYCF-IQC 544
           YY ++ +  +     IL   +  + WNYCF + C
Sbjct: 106 YYFIAKRFLMKSNDTILSSTDYQLEWNYCFDVHC 139


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +1

Query: 172 GHEYKGLLVSTDGYMNLQLANTEELV----DGTCTG---NLGEVLIRCNNVLYVRGAD 324
           G +  G+L   D  MNL L + EE +    DG  TG    LG V++R   ++ +   D
Sbjct: 43  GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 311 TYKTLLHLIKTSPKLPVQVP--STSSSVLASCKFM*PSVDTNKPLY 180
           +Y TL+  +  SP L V     ST+SS+ ++C    PSV ++ P Y
Sbjct: 286 SYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSC--PSVKSSGPSY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,161
Number of Sequences: 5004
Number of extensions: 40330
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)