Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b03
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...   120   9e-28
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    70   2e-12
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    33   0.13 
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    30   1.2  
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    29   2.1  
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    29   2.1  
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    29   2.1  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL031254-1|CAA20282.1|  395|Caenorhabditis elegans Hypothetical ...    28   6.6  

>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score =  120 bits (289), Expect = 9e-28
 Identities = 53/72 (73%), Positives = 60/72 (83%)
 Frame = +1

Query: 109 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 288
           +NPKPFLNSLTGK V+ KLKWG EYKG+LV+ D YMNLQLA+ EE +DG   GNLGE+LI
Sbjct: 7   VNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILI 66

Query: 289 RCNNVLYVRGAD 324
           RCNNVLYV G D
Sbjct: 67  RCNNVLYVGGVD 78


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/67 (47%), Positives = 41/67 (61%)
 Frame = +1

Query: 112 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 291
           NP  FL  + GK V+VKL  G +Y+G+L   DGYMN+ L  TEE  +G      G+  IR
Sbjct: 6   NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65

Query: 292 CNNVLYV 312
            NNVLY+
Sbjct: 66  GNNVLYI 72


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 115 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 291
           P   L +     +LV+LK G  Y G L + D +MN+ L +      DG     + E  +R
Sbjct: 4   PLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVR 63

Query: 292 CNNVLYVR 315
            + + Y+R
Sbjct: 64  GSTIKYLR 71


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 115 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 294
           P   L+   G  V ++   G  Y+G L   +  MN QLA T        +  L  V IR 
Sbjct: 7   PIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRG 66

Query: 295 NNVLYV 312
           N + ++
Sbjct: 67  NKIRFM 72


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 278 SPKLPVQVPSTSSSVLASCKFM*PSVDTNKPL 183
           +P +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 98  TPIIPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 278 SPKLPVQVPSTSSSVLASCKFM*PSVDTNKPL 183
           +P +P   PS+S+S+LA  +F  P  + N PL
Sbjct: 98  TPIIPCGSPSSSNSMLAQIQFHPPPTEMNSPL 129


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 121 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 300
           P L     K + +KL       G+L   D +MN+ +    E      + NLG  +IR N+
Sbjct: 7   PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNS 66

Query: 301 VL 306
           V+
Sbjct: 67  VV 68


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 121 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 300
           P L     K + +KL       G+L   D +MN+ +    E      + NLG  +IR N+
Sbjct: 7   PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNS 66

Query: 301 VL 306
           V+
Sbjct: 67  VV 68


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 54  CISC*PILKTCKNGGC 101
           C +C P+ +TC NGGC
Sbjct: 558 CTNCCPVGQTCMNGGC 573


>AL031254-1|CAA20282.1|  395|Caenorhabditis elegans Hypothetical
           protein 4R79.2 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 637 IINYTDYGIHAEEVVSDIVIKKKKY 563
           I NY D+ +  E+V+ +I+IKK  Y
Sbjct: 136 IKNYEDFQVRNEQVLDNIIIKKPLY 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,614
Number of Sequences: 27780
Number of extensions: 215391
Number of successful extensions: 434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)