Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14b02
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   0.99 
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.99 
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   0.99 
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    29   2.3  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 137 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 259
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 137 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 259
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 137 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 259
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 332 SKRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY 511
           SK   + E+ K   A+  + +H    +   + I +  + C+KV+ V E++   +K+QK+Y
Sbjct: 168 SKVQEYLENQKFKEAAEIVMKHEVVDDYSFEQITLPLILCDKVQIVDELLKISKKLQKSY 227


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 341 DRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYEL 517
           DRF ++   +        HA     +   +    V+C   RTVT IVN+D  K+ K + L
Sbjct: 11  DRFSDTDSEHIPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFAL 70

Query: 518 AE 523
            E
Sbjct: 71  IE 72


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 158 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 244
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 443 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 562
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 443 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 562
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 443 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 562
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 548 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 447
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 548 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 447
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 DHFGCSSNYCFNNYVCSI 259
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 DHFGCSSNYCFNNYVCSI 259
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,294,453
Number of Sequences: 27780
Number of extensions: 177763
Number of successful extensions: 495
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)