Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a23
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.84 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   2.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   3.4  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    26   4.5  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 211 SSYECPKLVNDCSGHRAHPRTGQL 282
           S   C K  NDCSGH    + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +2

Query: 203 ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 364
           A  ++T A ++    P T+ T ++V++  +  ++G PF  +  L++P    E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 370 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 534
           ++Q+ S+   +PQ       Q    P Q  Q + + RQLH   Q+P  T  S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 404 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 514
           +KE  EL   G      G SNEDD+  + C ++   G
Sbjct: 11  MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,593
Number of Sequences: 5004
Number of extensions: 42679
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)