Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a19
         (425 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022656-1|AAB87867.1|  971|Drosophila melanogaster beta-H spect...    28   4.5  
AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA...    28   4.5  
AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB...    28   4.5  
AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC...    28   4.5  

>AF022656-1|AAB87867.1|  971|Drosophila melanogaster beta-H spectrin
           protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 93  KHCVIIFKFGWSKYFNETKQY-LGLTEAQDTLNFPGLSEEIAEWIK 227
           K  + I    W     E +Q   GL EAQD+L F    ++I  WI+
Sbjct: 692 KRAIEIVLEAWQGLLAELEQRGRGLEEAQDSLEFNSQLDKIEAWIR 737


>AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA,
            isoform A protein.
          Length = 4097

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 93   KHCVIIFKFGWSKYFNETKQY-LGLTEAQDTLNFPGLSEEIAEWIK 227
            K  + I    W     E +Q   GL EAQD+L F    ++I  WI+
Sbjct: 2324 KRAIEIVLEAWQGLLAELEQRGRGLEEAQDSLEFNSQLDKIEAWIR 2369


>AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB,
            isoform B protein.
          Length = 4118

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 93   KHCVIIFKFGWSKYFNETKQY-LGLTEAQDTLNFPGLSEEIAEWIK 227
            K  + I    W     E +Q   GL EAQD+L F    ++I  WI+
Sbjct: 2324 KRAIEIVLEAWQGLLAELEQRGRGLEEAQDSLEFNSQLDKIEAWIR 2369


>AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC,
            isoform C protein.
          Length = 4207

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 93   KHCVIIFKFGWSKYFNETKQY-LGLTEAQDTLNFPGLSEEIAEWIK 227
            K  + I    W     E +Q   GL EAQD+L F    ++I  WI+
Sbjct: 2324 KRAIEIVLEAWQGLLAELEQRGRGLEEAQDSLEFNSQLDKIEAWIR 2369


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,268,757
Number of Sequences: 53049
Number of extensions: 279840
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)