Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a17
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0390 + 8056006-8057502                                           30   1.7  
07_03_0604 + 19903654-19904598                                         29   3.0  
03_05_0652 + 26446536-26446592,26447109-26447150,26448148-264482...    28   5.2  

>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 230 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 355
           L   DHP  P L   L  G+ +C   + C   D+  V   RP
Sbjct: 157 LSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHAVLRRRP 198


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  SHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYH-FTTDQFICNYLGITDHPMTPYLVPL 274
           S  +V+  TT  K RLLR   ++ ++ +    +  F T     NY  + DHP+ P +  L
Sbjct: 209 SDERVIVFTTNYKERLLRPGRMDMHVYMGYCGWEAFKT--LAHNYFLVDDHPLFPEIRQL 266

Query: 275 LSFGKASCA 301
           L+  +A+ A
Sbjct: 267 LAGVEATPA 275


>03_05_0652 +
           26446536-26446592,26447109-26447150,26448148-26448224,
           26448597-26448605,26448681-26448777
          Length = 93

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 296 CAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEHERQMDRCVTPSTVQI- 472
           C F   CI E V++  + +  +   NF SK  L  KL     +  ++++   +   V+I 
Sbjct: 21  CRFSLSCISEFVQVDVMEKDCSLDPNFGSKHSLNVKLILSYRQQTQEIEMHTSNDLVEIP 80

Query: 473 ---NLYDDNEDYL 502
               LY  N +YL
Sbjct: 81  TLNPLYSTNHNYL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,567
Number of Sequences: 37544
Number of extensions: 283846
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)