Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.0  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   1.8  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    26   4.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   7.1  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   9.3  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 33  FLLGTTLPQTLKKPTDEEYLPEDAFNYMLST 125
           +L  TT P ++     EEY P + F Y+LS+
Sbjct: 433 YLTNTTYPTSIPGEQIEEYFPFEEFYYLLSS 463


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -3

Query: 212 YGHVSF*HFYISAHFGDVINSINAELVGASR*HVIKRVLGQILFVGGLLERLRQRGAQQK 33
           Y H++F +F    H GD   S+ A   G     V+   L   LF+G  +    +RGA++ 
Sbjct: 240 YSHIAFRYFPWLPHVGDCSGSLFAAFFGCG---VLSSYL--FLFIGFYINTYIKRGAKKN 294

Query: 32  WTIRMKAVGE 3
              + KA G+
Sbjct: 295 ---QRKAAGK 301


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 477 MFGNDAELSKLIWMLIFTNKTYVSTTLIRTNSEFV 581
           M G+DA L+  +W  +F  +  V   ++ T  +F+
Sbjct: 215 MLGSDAVLATSVWRNLFVGRPDVDLVILETIVKFI 249


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 480  FGNDAELSKLIWMLIFTNKTYVSTTLIRTNSEFVN 584
            F N+A L K +W    T+   ++  L+ T S FV+
Sbjct: 1018 FRNEASLQKFLWEENLTSSKALTRGLLCTPSSFVS 1052


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 84  EYLPEDAFNYMLSTSTDELSIYRIY 158
           E+ PE +  Y   TS DELS  +IY
Sbjct: 3   EHSPEASSTYAQVTSNDELSSNKIY 27


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
 Frame = +3

Query: 87  YLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDV---KMLKTNMAIVNYMGNCNTCQADMR 257
           YLP   +NY  + STD     R Y+   M + +    ++ + +    Y G C  C    R
Sbjct: 512 YLPNVPYNYFTNISTD-----RTYYTEDMIQQLLTNGLISSTVDNDTYFGQCFACAVVKR 566

Query: 258 VALNN 272
               N
Sbjct: 567 TLERN 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,664
Number of Sequences: 5004
Number of extensions: 48276
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)