Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a15
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914...    31   0.59 
01_06_0985 - 33594588-33595451,33597655-33598518                       28   7.3  
02_02_0151 - 7220335-7220819,7220933-7223507                           27   9.7  

>07_01_1046 -
           9138000-9138293,9139550-9139714,9139862-9140010,
           9140363-9140510,9140659-9140727,9140827-9141087,
           9141498-9141692,9142932-9143048,9143701-9144477
          Length = 724

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +3

Query: 180 DVKMLKTNMAIVNYMGNCNTCQADMRVALNNLFRDLWNLDDENLITLALYVNKNKVSDML 359
           D +++  N  I  ++G  + C        + LF+DL  +  ++       VNK+      
Sbjct: 314 DTQVIGNNRKITAFIGGLDLCDGRYDTPEHRLFKDLDTVFKDDFHNPTFQVNKSGPRQPW 373

Query: 360 HNLKCK 377
           H+L CK
Sbjct: 374 HDLHCK 379


>01_06_0985 - 33594588-33595451,33597655-33598518
          Length = 575

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 243 QADMRVALNNLFRDLWNLDDENLITLALYVNKNKV 347
           Q  MRVALN++ +DL    DE+ +T+ L     KV
Sbjct: 530 QTTMRVALNDILKDLGAEQDES-VTVTLVPRHGKV 563


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 409 GRDPDTVDRHGLHFKLCNMSETLFLFTYKASVIKFSSSK 293
           GR PD +DR  L  +  N+S   F     +++ +FS  K
Sbjct: 124 GRLPDRIDRLSLGMQHLNLSSNAFTGDVPSAIARFSKLK 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,796
Number of Sequences: 37544
Number of extensions: 291339
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)