Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a15
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    32   0.30 
AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical...    31   0.92 
Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal transd...    27   8.6  
AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
           protein F56H6.13 protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 213 VNYMGNCNTCQADMRVALNNLFRDLWNLDDENLITLAL 326
           +N    C  C +DMR  +  ++  LWN+ ++  +T  L
Sbjct: 142 LNNKSECYDCGSDMRCVVERIYNGLWNIQNDRNMTFIL 179


>AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical
           protein Y38E10A.18 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 45  TTLPQTLKKP-TDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCR 179
           T  P+ LK+P T     PED F+ +L+   D+L +Y +  I    R
Sbjct: 117 TAEPRRLKEPATSSAAEPEDGFSIILNMKHDDLLVYYVEEIRNSVR 162


>Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical
           protein T07F10.3 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 78  DEEYLPEDAFNYMLSTSTDELS---IYRIYHIAKMCRDVKMLK 197
           ++ Y P   FN  +S+  D+++   +YRI+   + CR  KM +
Sbjct: 147 NDSYNPNSEFNLHVSSVPDDMADAELYRIFDKYQSCRGAKMFR 189


>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 595 LRVWLTNSLFVRINVVDTYVLLVKISIQINLLNS 494
           L V+ TNSL++ I +V  + LL  ++   NLL S
Sbjct: 129 LSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLIS 162


>Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.3 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 LIADMFGNDAELSKLIWMLIFTNKTYVSTTLIRTNS 572
           L   + GND E   + W+L FT+  ++   + R N+
Sbjct: 284 LFLRVIGNDYETLMMPWVLFFTHPLFLRNKIARMNT 319


>AY943817-1|AAY18583.1|  703|Caenorhabditis elegans signal
           transducer and activatorof transcription STA-1 protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 6   TNSFHSNCPFLLGTTLPQTLKKPTDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDV 185
           TN   SN P + G   P  L   +  ++ P +     +   +DEL   +I  ++ M  DV
Sbjct: 599 TNGRMSNAPSMFGADSPSPLSVQSKLDWSPGEVHQNHMMEMSDELG--QILTVSDMSGDV 656

Query: 186 KMLKTNMAIVNYMGNCN 236
           + L    A  N + N N
Sbjct: 657 ETL-LGPAFKNNITNYN 672


>AL132952-23|CAN99759.1|  703|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17c protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +3

Query: 6   TNSFHSNCPFLLGTTLPQTLKKPTDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDV 185
           TN   SN P + G   P  L   +  ++ P +     +   +DEL   +I  ++ M  DV
Sbjct: 599 TNGRMSNAPSMFGADSPSPLSVQSKLDWSPGEVHQNHMMEMSDELG--QILTVSDMSGDV 656

Query: 186 KMLKTNMAIVNYMGNCN 236
           + L    A  N + N N
Sbjct: 657 ETL-LGPAFKNNITNYN 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,144
Number of Sequences: 27780
Number of extensions: 285837
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)