Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a13
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   2.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   7.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   7.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   7.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   9.8  

>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 215 EQKLNCKYKKIEFN*LYIYFEFN*LYISF 301
           ++KL    ++I FN +Y+Y  F+  Y  F
Sbjct: 100 QEKLKAPRRRISFNRVYVYINFSMGYRGF 128


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -2

Query: 249 SIFLYLQFSFCSANVIASDNGTRPCNIKANNFNKL 145
           S +L     FC  N+   D     C+I   +  KL
Sbjct: 822 SAYLLKSIKFCDPNITPHDGDASLCDISEGSARKL 856


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 270  YMYN*LNSIFLYLQFSFCSANVI 202
            +M N ++S  LYL+ SFCS+N +
Sbjct: 1199 HMLNFISST-LYLKVSFCSSNFL 1220


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 115 HFTDYKHVMLKSIIFLNYLTSVYIFNLAR 29
           HF D K  +L  I+F N    VY+  + R
Sbjct: 105 HFLDLKKPLLPQILFGNIKKDVYLDQVHR 133


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 177 CNIKANNFNKLLCNVVLS 124
           C+I+ NN + L+C++ LS
Sbjct: 734 CSIRENNLDGLVCSLPLS 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,830
Number of Sequences: 5004
Number of extensions: 17121
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)