Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a12
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.29 
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   2.7  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   4.7  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   8.2  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 435 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKEN 578
           K  E  E EWN+ +N+     E+A+E E T     Q Q+LL +  +EN
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 441 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 563
           V+ T +  +E   QTV+ L  +IEG     W A  ++L+ +
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLICE 190


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
 Frame = -2

Query: 546 VPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRI-------SRELH 388
           +P    AP    +LRPP   +   DL+ +RSR      P +    VR+         E  
Sbjct: 523 IPLNGVAPYE-SELRPPPKWKPMPDLKVVRSRPSLKQRPLRSAEYVRVCELKCLQEEEFD 581

Query: 387 TP*PTVTVRSNIRAPLHRFPCCT---GMLPDPHQKCK 286
                  V SN++   H  PC T   G L +P Q+ K
Sbjct: 582 NKVLLEQVESNVQTD-HNSPCNTIYVGNLSNPDQEKK 617


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 398 VSYIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 297
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 294 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 464
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 141 RLVLCTRSVCSHLNAKPRATTL 76
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 100 RKATRDNIIYRIFYKLFPKCEDRTVLSTLH*CC 2
           R  + +N I R+  +LFP CED      LH  C
Sbjct: 200 RYVSNENYIDRLI-ELFPLCEDLENTDDLHRLC 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,303
Number of Sequences: 5004
Number of extensions: 53014
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)